Query= MSMg01no064_k12.b1 MSMg01no064_k12.b1 CHROMAT_FILE:
MSMg01no064_k12.b1 PHD_FILE: MSMg01no064_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:45 2005
(423 letters)
>mm_chr4_54041587_54042408
Length = 822
Score = 745 bits (385), Expect = 0.0
Identities = 401/411 (97%), Gaps = 9/411 (2%)
Strand = Plus / Minus
Query: 17 gaattcagtcatgactcaaaatggaaacaaagacgaccattcttagccatgccagccagc 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gaattcagtcatgactcaaaatggaaacaaagacgaccattcttagccatgccagccagc 563
Query: 77 tacgcggaatgaaaaactacaggct----gcccccccgcagccccctaggacgcttcccc 132
||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 562 tacgcggaatgaaaaactacaggctggagg-----ccgcagccccctaggacgcttcccc 508
Query: 133 accccattgtccttgagggcactactgttaaatacatatgacagccaaagagatgaggag 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 accccattgtccttgagggcactactgttaaatacatatgacagccaaagagatgaggag 448
Query: 193 aatagttgccacagagcaatgattggatctctcttttcatgagctagaatagccagaacc 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aatagttgccacagagcaatgattggatctctcttttcatgagctagaatagccagaacc 388
Query: 253 atgtaagccagtgaagtagcacttgagaaggggccctgggaggtgccattgtctccctct 312
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 387 atgtaagccagtgaagtagcacttgagaaggggccctgggaggcgccattgtctccctct 328
Query: 313 catttggtgtctgaagaacatattatattatataacctttctcccaagcctgtcctgctt 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 catttggtgtctgaagaacatattatattatataacctttctcccaagcctgtcctgctt 268
Query: 373 tgactgggaacttcttcctttagaagcctgcggataacaacttgtggatgg 423
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgactgggaacttcttcctttagaagcctgcggataacaacttgtggatgg 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 822
Length adjustment: 9
Effective length of query: 414
Effective length of database: 813
Effective search space: 336582
Effective search space used: 336582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no064_k12.g1 MSMg01no064_k12.g1 CHROMAT_FILE:
MSMg01no064_k12.g1 PHD_FILE: MSMg01no064_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:45 2005
(368 letters)
>mm_chr4_53899064_53899831
Length = 768
Score = 619 bits (320), Expect = 0.0
Identities = 356/368 (96%)
Strand = Plus / Plus
Query: 1 caagagaacgttcttatgaagtgctaagagaatactagaatcaagaggcacccagggacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagagaacgttcttatgaagtgctaagagaatactagaatcaagaggcacccagggagg 260
Query: 61 cccaggaagaagttgactgcttctggaatgaaggcgggtcctctgcacagccgtagctgc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccaggaagaagttgactgcttctggaatgaaggcgggtcctctgcacagccgtagctgc 320
Query: 121 ccctgcaggagtgatgtgaatggggattgctgaccgctgtgcctgtaagcgctggcttga 180
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 321 ccctgcaggagtgatgtgaatggatattgctgaccgctgtgcctggaagcgctggcttga 380
Query: 181 gagtgggtgtcaggcagtctgggtttaagtgcagcctgtgctacagcaggggcactgact 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 gagtgggtgtcaggcagtctgggtttaagtgcagcctgtgctacggcaggggcactgact 440
Query: 241 cgatgccttgggctttacgttcgcttccttctggctgcaagccaccgtgggactggggat 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 cgatgccttgggctttacgttcgcttccttctggctccaagccaccgtgggactggggat 500
Query: 301 tcgtttgaggagggcatagcaggaaatctttttttgtttgattcttttgcctgtgtgagt 360
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 gcgtttgaggagggcatagcaggaaatctttgcctgtttgattcttttgcctgtgtgagt 560
Query: 361 ccttcaag 368
||||||||
Sbjct: 561 ccttcaag 568
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space: 272481
Effective search space used: 272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
