BAC Information

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BAC

Clone NameMSMg01-064N08
Chromosome4 (Build37)
Map Location 65,942,195 - 65,942,502
singlet/doubletsinglet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499, Tlr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064N08.T7 (MSMg01no064_n08.b1)MSMg01-064N08.TJ (MSMg01no064_n08.g1)
ACCAG290192AG290193
length727734
length of high quality
(start - end)
311 (45 - 355)---
definitionCHROMAT_FILE: MSMg01no064_n08.b1 PHD_FILE: MSMg01no064_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:05 2005CHROMAT_FILE: MSMg01no064_n08.g1 PHD_FILE: MSMg01no064_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCCATTTTCCACGCTATAATAGAGGGGCTGAGCTCAGTAACTGCTA
CCAGCCTGCTGGATGGAAATCTCTGATCCTTTGCTAGGGGGAAAAACTGG
CAGCAAGGTCATTTCTTAAAGATTCACTCTCATTATGAAAACACAGTCAT
AATCTCTGGAGTGAGAATCAGGTAGGCAGGGACTGGATTCTTATCGGCTA
CAGCCTACAACAGTGCTGGGTACTGAACCTAAAGTTAATATGATGACTTA
TAGTAGTTAATATTTATAGTGTTCCTGGCTGTATGCATGTTTGTTCATGT
CTTCCTCCTAACATTCCCCCGACCTATGGATAATAACAAATGCAGATGTT
CACAGTGTTGACACACCAGAGTCAGCTAAGAGATCAGCACCAGCCATGCT
CAGTAATGTGTGCAGCAGTGAACGCTGCTCAAACTACCATTTCTCCAGTG
CTATACAAATAAATTGCTTTTTACTCTAGTTAATAGAGACATTTAGGATC
GCTTGCTCCGAAGCACCCAAGCTTGTCTTTGATTGTAAATTTCTGGAGAA
TAGGAATCACATCTGTCGGATGTCCTCGGTAGGAGACTGTGGTTACAATC
TTGAGCTTCTTTGGAGTGTGAGATTAGGAGTCGTGAGTCTGAGTTATCCC
ATCTCCCCTCAGCCCTACCCTGCCTTA
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTAATCGGTCCGGCAATAAACA
TGGAGGGCCCCAAAAAAACCAACCACTTGGGGACAAAAAGGAAAGAATGG
TAAAACTAAGGAAACTGGAAATTAACAAAAAAGAACAAAAATAAAAAACC
AGGCCAACAAAGAACGGGGGCCCTCCCCAACCAAAAAAAAAAACCCCCTA
AACCCTGGGACCTAAACCCTTTTGGAACCCCCCAAACTGGAAAGGGTTTA
AATCCAGGAAAATGGCGGAACCCCTCCCAAACCCGGCATTTCCTCCAAGG
ATCCCAAGGAAATTTAATGAATTCCCCCCCCCCCTCCACTCCTTTGAAAA
ATCCAAGAAAAAAAAAAAACCCCCCCCCCAAAAAAAAAAAAAAACAAGGA
CCCGGCCATGGTTGCGAAAACAAGGACCAAATGGGAAGGCCCAATGGGGT
TAAAAAAACCACACAAAAAGAAAGGGGCTGGGCAACGAAAAAGGTCCCAG
GGAAAGAAAACCGAACTAAAAAAAACGGCCAAAATCCTTCCCCCTCAGCA
GGCCCTTGACGGCCCCAAGTCCCCTATCCCGCCCCGGACCCACCCAACAA
CAAACTGCCATTCCTCCCCCCCTTCTCCACCTAATATTTCCTTCCCAAAC
CAAAAAATTCCCCAACTGTCCGCCCTGTTGCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_n08.b1 MSMg01no064_n08.b1 CHROMAT_FILE:
MSMg01no064_n08.b1 PHD_FILE: MSMg01no064_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:05 2005
         (311 letters)



>mm_chr4_65941991_65942702
          Length = 712

 Score =  549 bits (284), Expect = e-161
 Identities = 302/308 (98%), Gaps = 1/308 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccccattttccacgctataatagaggggctgagctcagtaactgctaccagcctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccccattttccacgctataatagaggggctgagctcagtaactgctaccagcctg 264

                                                                       
Query: 65  ctggatggaaatctctgatcctttgctaggggg-aaaaactggcagcaaggtcatttctt 123
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 ctggatggaaatctctgatcctttgctagggggaaaaaactggcagcaaggtcatttctt 324

                                                                       
Query: 124 aaagattcactctcattatgaaaacacagtcataatctctggagtgagaatcaggtaggc 183
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagcttcactctcattatgaaaacacagtcataatctctggagtgagaatcaggtaggc 384

                                                                       
Query: 184 agggactggattcttatcggctacagcctacaacagtgctgggtactgaacctaaagtta 243
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 tgggactagattcttatcggctacagcctacaacagtgctgggtactgaacctaaagcta 444

                                                                       
Query: 244 atatgatgacttatagtagttaatatttatagtgttcctggctgtatgcatgtttgttca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atatgatgacttatagtagttaatatttatagtgttcctggctgtatgcatgtttgttca 504

                   
Query: 304 tgtcttcc 311
            |||||||
Sbjct: 505 agtcttcc 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 712
Length adjustment: 9
Effective length of query: 302
Effective length of database: 703
Effective search space:   212306
Effective search space used:   212306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)