BAC Information

Click to search

BAC

Clone NameMSMg01-065A07
Chromosome4 (Build37)
Map Location 9,461,311 - 9,461,699
singlet/doubletsinglet
Overlap geneAsph
Upstream geneRab2, EG666752, LOC666760, Chd7, LOC666782, LOC100039584, 4933402J24Rik
Downstream geneGdf6, 4930448K20Rik, LOC666840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065A07.T7 (MSMg01no065_a07.b1)MSMg01-065A07.TJ (MSMg01no065_a07.g1)
ACCAG290328AG290329
length679679
length of high quality
(start - end)
387 (49 - 435)518 (73 - 590)
definitionCHROMAT_FILE: MSMg01no065_a07.b1 PHD_FILE: MSMg01no065_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:24 2005CHROMAT_FILE: MSMg01no065_a07.g1 PHD_FILE: MSMg01no065_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATATGCGGATTCA
TTTTATTATCTTTCAAAGCCATTCGTGACTCTGAAGTACAAGTGACATGT
CCCCTAAGAAGTTTGAGTGAATTAGTCCATCCACAAAAGTTTGTGTGACA
GAGCTGTCCTGGACACATGGATTGCATGCCTCTCTCTTTCCAATCTGACT
TTAAGAGATTGGATGCCTGTCTCTAAGGATTAATGAGACCAGCATTGTCC
TTCCACTAATCTTGCAGAGTCTTCAGGTCTGTTGGGTAGCTCTGCAGACC
CCAAGCGGCAAGGGTTCACCTGGTGGTGTCCGTAGAACTCCCTATCTCAG
GGGCATTGTTTCTGTTCAGTCATCTATCAATATTTGTGATCTTGGAAGTT
AATTCACTATAGCTTAAACGAAGCATAAAAGCTGGCTACAAATAGCTGCT
GGACAATGTGTAGCTAGGATAGATTATTGACATGGGATTTCCTGTTCTGG
GAGCTGAATCTGCTCAGTGAGCTTACTGTGCACTCTAAAAGGTAGTTGAA
TGCTCTGATGTGTCTTTCCATAAAGGAAGTATGAAATTGAGTCATTAATT
TTTTCTCCCTAAAGATCCCCCCTTTACTCACTGGTTCCACTGAACCCTTG
CCATCCTGGGAGCCTTATCCTAATGATGT
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGCCAGGGAGCAGGAGCTGATGCAGAG
GCCATGGAGGGATGTTCTTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCC
TGCTCTCTTATAGAACCCAAGACTACCAGCCCAGAGATGGTCCCACCCAC
AAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTACAGTTGG
ATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTTCTTTGTGATAACAC
AAAACTAGCCAGTACAAAGTTACCTTATTTATAATAATCCTTGTTTGAAA
TCTATTTTATCTGATATTTATATAATTAGCATGCCTACTTGGTTGCCAAT
TCTTTTTACTTGGAATGTCATTTCTTCATAGGGCTATTTGTCTTTGTCAA
TGACATATGTTTTACATGGATAATATTAGGTGGACTCTTGTTTTTTAATA
TAGTCTCAGAGTTTGTTACTTTAATTGGATAATTGAGATCATTTAGATTC
TAATTTATTATTAAAAAGAATATATTCATTCCCATTTCTTCATTGGTTTT
TTTTAAATATCTGATAGCTCCCTAATTCTTATTTACTCAGCTGTTATAAT
GACATTTATTTTCTTCCTGTGACCTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_a07.b1 MSMg01no065_a07.b1 CHROMAT_FILE:
MSMg01no065_a07.b1 PHD_FILE: MSMg01no065_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:24 2005
         (387 letters)



>mm_chr4_9461111_9461899
          Length = 789

 Score =  659 bits (341), Expect = 0.0
 Identities = 377/389 (96%), Gaps = 2/389 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattttattatctttca-aagccattcgtgactctgaagtac-aagtgacatgtccccta 58
           ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 589 cattttattatctttcacaagccattcgtggctctgaagtacaaagtgacatgtccccta 530

                                                                       
Query: 59  agaagtttgagtgaattagtccatccacaaaagtttgtgtgacagagctgtcctggacac 118
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ggaagtttgagtgaattagtccatccacaaaagtttgtgtgacagagctgtcctggacac 470

                                                                       
Query: 119 atggattgcatgcctctctctttccaatctgactttaagagattggatgcctgtctctaa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 atggattgcatgcctctctctttccaatctgactttaagagattggatgcctgtctctaa 410

                                                                       
Query: 179 ggattaatgagaccagcattgtccttccactaatcttgcagagtcttcaggtctgttggg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ggattaatgagaccagcattgtccttccactaatcttgcagagtcttcaggtctgttggg 350

                                                                       
Query: 239 tagctctgcagaccccaagcggcaagggttcacctggtggtgtccgtagaactccctatc 298
           ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| |
Sbjct: 349 tagctctgcagaccccaagcggcaagggttcacctagtggtgtctgtataactccctagc 290

                                                                       
Query: 299 tcaggggcattgtttctgttcagtcatctatcaatatttgtgatcttggaagttaattca 358
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tcagggacattgtttctgttcagtcatctatcaatatttgtgatcttggaagttaattca 230

                                        
Query: 359 ctatagcttaaacgaagcataaaagctgg 387
           |||||||  |||||||||| |||||||||
Sbjct: 229 ctatagccaaaacgaagcagaaaagctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 789
Length adjustment: 9
Effective length of query: 378
Effective length of database: 780
Effective search space:   294840
Effective search space used:   294840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)