BAC Information

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BAC

Clone NameMSMg01-065D07
Chromosome4 (Build37)
Map Location 150,839,839 - 150,840,090
singlet/doubletsinglet
Overlap geneCamta1
Upstream geneRere, Slc45a1, LOC677027, Errfi1, Park7, Tnfrsf9, Uts2, Per3, Vamp3
Downstream geneLOC100041960, Dnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2, LOC100042028
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065D07.T7 (MSMg01no065_d07.b1)MSMg01-065D07.TJ (MSMg01no065_d07.g1)
ACCAG290471AG290472
length747749
length of high quality
(start - end)
252 (140 - 391)241 (135 - 375)
definitionCHROMAT_FILE: MSMg01no065_d07.b1 PHD_FILE: MSMg01no065_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:38 2005CHROMAT_FILE: MSMg01no065_d07.g1 PHD_FILE: MSMg01no065_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTNNNNTTTTNNNNTTTTTTTTNNTTTNTTTTTNTTNNTTTTTNNT
TNNNNTCTTCTTCCATACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTTCGAAAGAATCCGCGGAATTCCTCCCCTTCTCTTGTCCCAGAAGCCC
CAAGTCTGCAAGCTGTGCAGACGAGGGGGTAGCGCCCAGAGTAGCCCACC
TGAGTGCCTGGTCTATAACAGCGGCTCGGTAAACATTAACCAAATAAATC
GCCAGGTGTCATAATAAAAGTTTTAGAGGGCCTTGTGGGAGCTGCAGGCA
CGAGGCATTAGTGAGTCCTCACAGACCCACTCTAGACCGACTTCTGGTCA
TTTCCATCCCCATGAACCCATAGCCCTTTCACCCTGTGACCTCTGACATC
AATTTAGATAAACAAAACTGTGGTTAGCATCCTGCATTTAAAGATCCTGG
GGAAATGCACTTCCATTGTGTGAGTTCTGAAAGCTCTTCATACCCTGGTT
TACTGTCCACACAAAGCCATCTGGTCCTTACAGAGGGACACCTGGCACCC
CTAGTATGAAGGTCTCTTTTCCCAATGCTGTCTGGAGATGGTCTCTTTGC
ACGCATTTCCAGAGATCAGGCTCAGATGGGGAGAGTATTACCCTTGCTGC
TGTTTGAAGTTATCCCCTTGGACTTCTTGAGGTTTATAGAGATTATAAAT
CCTTATCCTAAGAATCTTGTTGTCTTTACATCTTTCCTGGTACTTAG
NATTTTTTTTTTAATATTATATTTAAAATNTNATTATCTTNNNNTTTTTC
TCATTTTCTCTCTATGATATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCCTGGGGAGACG
TTAAGAAGGGCTCCATCTCCCCATAAAGCCCCGGTGACAAACCAACGTGA
GATTCCACCAAAGTCCTCGCAGGAAATTGATGAGTTTATTGGCTTCCTTA
TAGAGTGTAGGTGAGGGGTCCCTAACAGGAACACACACAGGTGGCCCCAA
ATCAGCCACACTGGTAAGTCTGCACCCAGGAGGGTGACGGGTTGCCTATG
GTTGTATAACAAAACCCGTGTGAGTCGTCCCCTAGCCTGGATACTTCAGC
ACCTCCTGAAACCCTCCCCTCACAAGGCCATGCACAATTAGGCGGGAAAC
TGGACACAAATGGTCAAGAGGAGTGGCTGACCCAAGAGTCCTTCCATGCC
TTCCTTCCATGAGAGACCATACATAGTCCCCAGGCTCTGTGGTGATTGAC
TCCCGAAAGCTAGAATGGATGCTCTGAGAAAGCAAGGTAGCTTCTTTTTT
TCCAGAGGAGCTCTCTCTGTAGCAGTACCCCTATGAGCTGGACTTTGTAT
CACCTGGTGACAGCTTTTCTCGCTGTGCCTCCCCGTGAACTTGTTGACCA
TCGATTAGTATTCTGAGTCCTATTTTATACTCTGCACTCTTTCTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_d07.b1 MSMg01no065_d07.b1 CHROMAT_FILE:
MSMg01no065_d07.b1 PHD_FILE: MSMg01no065_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:38 2005
         (252 letters)



>mm_chr4_150839639_150840290
          Length = 652

 Score =  472 bits (244), Expect = e-138
 Identities = 250/252 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccagaagccccaagtctgcaagctgtgcagacgagggggtagcgcccagagtagcccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cccagaagccccaagtctgcaagctgtgcagacgagggggtagcgcccagagtagcccac 393

                                                                       
Query: 61  ctgagtgcctggtctataacagcggctcggtaaacattaaccaaataaatcgccaggtgt 120
           |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 392 ctgagtgcctggtctataacagcggctcggtaaacattaaccgaataaattgccaggtgt 333

                                                                       
Query: 121 cataataaaagttttagagggccttgtgggagctgcaggcacgaggcattagtgagtcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cataataaaagttttagagggccttgtgggagctgcaggcacgaggcattagtgagtcct 273

                                                                       
Query: 181 cacagacccactctagaccgacttctggtcatttccatccccatgaacccatagcccttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cacagacccactctagaccgacttctggtcatttccatccccatgaacccatagcccttt 213

                       
Query: 241 caccctgtgacc 252
           ||||||||||||
Sbjct: 212 caccctgtgacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)