Query= MSMg01no065_f08.b1 MSMg01no065_f08.b1 CHROMAT_FILE:
MSMg01no065_f08.b1 PHD_FILE: MSMg01no065_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:48 2005
(600 letters)
>mm_chr4_105126825_105127824
Length = 1000
Score = 1054 bits (545), Expect = 0.0
Identities = 580/592 (97%), Gaps = 1/592 (0%)
Strand = Plus / Minus
Query: 6 gaattccatataccatctattaattattattattattattactgttactattatgtctgt 65
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 850 gaattccatataccat-tattaattattattattattattactgttattattatgtctgt 792
Query: 66 cagctgacaaggagaaaattttgcctggtatgagaatgaaccagctattatgactcaaag 125
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 791 cagctgacaaggagaaaattttacctggtatgagaatgaaccagctattatgactcaaag 732
Query: 126 tctttaatccaagctcttgagaggctgaggcctgacctacatagtgctatcctgtctcat 185
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 731 tctttaatccaagctcttgagaggctgaggcctggcctacatagtgctatcctgtctcat 672
Query: 186 gtctcatgcaacaaaaatgataaataatatactaatgaataacataaaaaacaaaaccaa 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gtctcatgcaacaaaaatgataaataatatactaatgaataacataaaaaacaaaaccaa 612
Query: 246 gagtgcaagtgagagaagctgcccatataaactattgattaatgttaaagaggaacctcc 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gagtgcaagtgagagaagctgcccatataaactattgattaatgttaaagaggaacctcg 552
Query: 306 agtagccatttgtcctgggtttctgtggcagatgccagcagaaacaaatgattcatacac 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agtagccatttgtcctgggtttctgtggcagatgccagcagaaacaaatgattcatacac 492
Query: 366 acatactgtaggcaagtcaaatcagctgcatggtttggagaggccgggtctcttgaaagg 425
|||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||
Sbjct: 491 acatactgtaggcaagtcaaatcagctgcacggtttggagaggctgcatctcttgaaagg 432
Query: 426 gtgattcctatatgtcattcctgggtttcagcagcagatgaatgaagatcagagcatgac 485
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gtgattcctatatgccattcctgggtttcagcagcagatgaatgaagatcagagcatgac 372
Query: 486 cattcctggatatcgtanatatgaaggagggttcagccagaggcatctggaatgtttcag 545
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 371 cattcctggatatcgtaaatatgagggagggttcagccagaggcatctggaatgtttcag 312
Query: 546 actgaactaggccatgagaggagagaaccaagaaccaagaggacacatagac 597
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 actgaactaggccatgagaggagagaaccaagaaccaagaggacacatagac 260
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_f08.g1 MSMg01no065_f08.g1 CHROMAT_FILE:
MSMg01no065_f08.g1 PHD_FILE: MSMg01no065_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:48 2005
(571 letters)
>mm_chr4_105022679_105023648
Length = 970
Score = 1027 bits (531), Expect = 0.0
Identities = 566/585 (96%), Gaps = 15/585 (2%)
Strand = Plus / Plus
Query: 1 caaccgggatcattctgtaaagactacactacggatgtgcgagggaggggcacgtcctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaccgggatcattctgtaaagactacactacggatgtgcgagggaggggcacgtcctat 260
Query: 61 gagagtcccagtcaagcttggagcactggtgatggcgttctccttcacgctcagcactcc 120
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 gagagtcccagtcaaacttggagcactggtgatggcgttctccttcaccctcagcactcc 320
Query: 121 ctctacccccttaccgcgttttctttggctaacccaggtgtccatagcagaaggtagagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctacccccttaccgcgttttctttggctaacccaggtgtccatagcagaaggtagagt 380
Query: 181 accatgaagtgatttaatgactctccttcccttgtccaggtgctctgggccttcaatggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accatgaagtgatttaatgactctccttcccttgtccaggtgctctgggccttcaatggg 440
Query: 241 atgcaagtcaggaaatcattagtgggtgtttatataagggaagaggagaagttgctgaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcaagtcaggaaatcattagtgggtgtttatataagggaagaggagaagttgctgaaa 500
Query: 301 gtcagacatttggatgatccaatatctgaaataacaaaatctgtccttccaaaaaaaaaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 gtcagacatttggatgatccaatatctgaaataacaaaatctgtccttcccaaaaaaaaa 560
Query: 361 aaaaaaaccctaaccccccaaaaccataaaccaaaacacctcagcagatccttttacatg 420
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaaatcc-taaccccccaaaaccataaaccaaaacacctcagcagatccttttacatg 619
Query: 421 tgtgtgcaaacatacacacttatacacaca--cacacatttata------tacacacaca 472
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 620 tgtgtgcaaacatacacacttatacacacatacacacatttatacacacatacacacaca 679
Query: 473 cacacacacacacacacac------ttcttttttaacgttatcagctgtgtacaagatgc 526
||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 680 cacacacacacacacacacacacacttcttttttaacgttatcagctgtgtacaagatgc 739
Query: 527 aagtgagagtcaaggaatgcaaatgtgtttccactcatgtctacc 571
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aagtgagagtcaaggaatgcaaatgtgtttccactcatgtctacc 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 970
Length adjustment: 10
Effective length of query: 561
Effective length of database: 960
Effective search space: 538560
Effective search space used: 538560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
