BAC Information

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BAC

Clone NameMSMg01-065F08
Chromosome4 (Build37)
Map Location 105,022,879 - 105,127,674
singlet/doubletdoublet
Overlap geneLOC433742
Upstream geneDab1, C8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513, Ppap2b
Downstream geneLOC665518, LOC434381, Ppia-ps4_954.1, Map1lc3, LOC384039, Usp24, LOC100039616, Pcsk9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065F08.T7 (MSMg01no065_f08.b1)MSMg01-065F08.TJ (MSMg01no065_f08.g1)
ACCAG290569AG290570
length690695
length of high quality
(start - end)		600 (39 - 638)571 (70 - 640)
definitionCHROMAT_FILE: MSMg01no065_f08.b1 PHD_FILE: MSMg01no065_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:48 2005CHROMAT_FILE: MSMg01no065_f08.g1 PHD_FILE: MSMg01no065_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,127,084 - 105,127,674)(105,022,879 - 105,023,462)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAATCCGCGGAATTCC
ATATACCATCTATTAATTATTATTATTATTATTACTGTTACTATTATGTC
TGTCAGCTGACAAGGAGAAAATTTTGCCTGGTATGAGAATGAACCAGCTA
TTATGACTCAAAGTCTTTAATCCAAGCTCTTGAGAGGCTGAGGCCTGACC
TACATAGTGCTATCCTGTCTCATGTCTCATGCAACAAAAATGATAAATAA
TATACTAATGAATAACATAAAAAACAAAACCAAGAGTGCAAGTGAGAGAA
GCTGCCCATATAAACTATTGATTAATGTTAAAGAGGAACCTCCAGTAGCC
ATTTGTCCTGGGTTTCTGTGGCAGATGCCAGCAGAAACAAATGATTCATA
CACACATACTGTAGGCAAGTCAAATCAGCTGCATGGTTTGGAGAGGCCGG
GTCTCTTGAAAGGGTGATTCCTATATGTCATTCCTGGGTTTCAGCAGCAG
ATGAATGAAGATCAGAGCATGACCATTCCTGGATATCGTANATATGAAGG
AGGGTTCAGCCAGAGGCATCTGGAATGTTTCAGACTGAACTAGGCCATGA
GAGGAGAGAACCAAGAACCAAGAGGACACATAGACCAAATGGCTGAGGTT
GTATAGGAAAGAGAAGCTGGTGGAGAGGAGGCTAAGCTCA

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAACCGGGATCATTCTGTAAAGACTACACTA
CGGATGTGCGAGGGAGGGGCACGTCCTATGAGAGTCCCAGTCAAGCTTGG
AGCACTGGTGATGGCGTTCTCCTTCACGCTCAGCACTCCCTCTACCCCCT
TACCGCGTTTTCTTTGGCTAACCCAGGTGTCCATAGCAGAAGGTAGAGTA
CCATGAAGTGATTTAATGACTCTCCTTCCCTTGTCCAGGTGCTCTGGGCC
TTCAATGGGATGCAAGTCAGGAAATCATTAGTGGGTGTTTATATAAGGGA
AGAGGAGAAGTTGCTGAAAGTCAGACATTTGGATGATCCAATATCTGAAA
TAACAAAATCTGTCCTTCCAAAAAAAAAAAAAAAAACCCTAACCCCCCAA
AACCATAAACCAAAACACCTCAGCAGATCCTTTTACATGTGTGTGCAAAC
ATACACACTTATACACACACACACATTTATATACACACACACACACACAC
ACACACACACTTCTTTTTTAACGTTATCAGCTGTGTACAAGATGCAAGTG
AGAGTCAAGGAATGCAAATGTGTTTCCACTCATGTCTACCATGTGCCTGG
CGCTAGATATGTTGTCTGCTCTACTCTTCATAGTAACTCTGTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_f08.b1 MSMg01no065_f08.b1 CHROMAT_FILE:
MSMg01no065_f08.b1 PHD_FILE: MSMg01no065_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:48 2005
         (600 letters)



>mm_chr4_105126825_105127824
          Length = 1000

 Score = 1054 bits (545), Expect = 0.0
 Identities = 580/592 (97%), Gaps = 1/592 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccatataccatctattaattattattattattattactgttactattatgtctgt 65
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 850 gaattccatataccat-tattaattattattattattattactgttattattatgtctgt 792

                                                                       
Query: 66  cagctgacaaggagaaaattttgcctggtatgagaatgaaccagctattatgactcaaag 125
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 791 cagctgacaaggagaaaattttacctggtatgagaatgaaccagctattatgactcaaag 732

                                                                       
Query: 126 tctttaatccaagctcttgagaggctgaggcctgacctacatagtgctatcctgtctcat 185
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 731 tctttaatccaagctcttgagaggctgaggcctggcctacatagtgctatcctgtctcat 672

                                                                       
Query: 186 gtctcatgcaacaaaaatgataaataatatactaatgaataacataaaaaacaaaaccaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gtctcatgcaacaaaaatgataaataatatactaatgaataacataaaaaacaaaaccaa 612

                                                                       
Query: 246 gagtgcaagtgagagaagctgcccatataaactattgattaatgttaaagaggaacctcc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 611 gagtgcaagtgagagaagctgcccatataaactattgattaatgttaaagaggaacctcg 552

                                                                       
Query: 306 agtagccatttgtcctgggtttctgtggcagatgccagcagaaacaaatgattcatacac 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agtagccatttgtcctgggtttctgtggcagatgccagcagaaacaaatgattcatacac 492

                                                                       
Query: 366 acatactgtaggcaagtcaaatcagctgcatggtttggagaggccgggtctcttgaaagg 425
           |||||||||||||||||||||||||||||| ||||||||||||| |  ||||||||||||
Sbjct: 491 acatactgtaggcaagtcaaatcagctgcacggtttggagaggctgcatctcttgaaagg 432

                                                                       
Query: 426 gtgattcctatatgtcattcctgggtttcagcagcagatgaatgaagatcagagcatgac 485
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gtgattcctatatgccattcctgggtttcagcagcagatgaatgaagatcagagcatgac 372

                                                                       
Query: 486 cattcctggatatcgtanatatgaaggagggttcagccagaggcatctggaatgtttcag 545
           ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 371 cattcctggatatcgtaaatatgagggagggttcagccagaggcatctggaatgtttcag 312

                                                               
Query: 546 actgaactaggccatgagaggagagaaccaagaaccaagaggacacatagac 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 actgaactaggccatgagaggagagaaccaagaaccaagaggacacatagac 260


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no065_f08.g1 MSMg01no065_f08.g1 CHROMAT_FILE:
MSMg01no065_f08.g1 PHD_FILE: MSMg01no065_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:48 2005
         (571 letters)



>mm_chr4_105022679_105023648
          Length = 970

 Score = 1027 bits (531), Expect = 0.0
 Identities = 566/585 (96%), Gaps = 15/585 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaccgggatcattctgtaaagactacactacggatgtgcgagggaggggcacgtcctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaccgggatcattctgtaaagactacactacggatgtgcgagggaggggcacgtcctat 260

                                                                       
Query: 61  gagagtcccagtcaagcttggagcactggtgatggcgttctccttcacgctcagcactcc 120
           ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 gagagtcccagtcaaacttggagcactggtgatggcgttctccttcaccctcagcactcc 320

                                                                       
Query: 121 ctctacccccttaccgcgttttctttggctaacccaggtgtccatagcagaaggtagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctacccccttaccgcgttttctttggctaacccaggtgtccatagcagaaggtagagt 380

                                                                       
Query: 181 accatgaagtgatttaatgactctccttcccttgtccaggtgctctgggccttcaatggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accatgaagtgatttaatgactctccttcccttgtccaggtgctctgggccttcaatggg 440

                                                                       
Query: 241 atgcaagtcaggaaatcattagtgggtgtttatataagggaagaggagaagttgctgaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcaagtcaggaaatcattagtgggtgtttatataagggaagaggagaagttgctgaaa 500

                                                                       
Query: 301 gtcagacatttggatgatccaatatctgaaataacaaaatctgtccttccaaaaaaaaaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 gtcagacatttggatgatccaatatctgaaataacaaaatctgtccttcccaaaaaaaaa 560

                                                                       
Query: 361 aaaaaaaccctaaccccccaaaaccataaaccaaaacacctcagcagatccttttacatg 420
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaaatcc-taaccccccaaaaccataaaccaaaacacctcagcagatccttttacatg 619

                                                                       
Query: 421 tgtgtgcaaacatacacacttatacacaca--cacacatttata------tacacacaca 472
           ||||||||||||||||||||||||||||||  ||||||||||||      ||||||||||
Sbjct: 620 tgtgtgcaaacatacacacttatacacacatacacacatttatacacacatacacacaca 679

                                                                       
Query: 473 cacacacacacacacacac------ttcttttttaacgttatcagctgtgtacaagatgc 526
           |||||||||||||||||||      |||||||||||||||||||||||||||||||||||
Sbjct: 680 cacacacacacacacacacacacacttcttttttaacgttatcagctgtgtacaagatgc 739

                                                        
Query: 527 aagtgagagtcaaggaatgcaaatgtgtttccactcatgtctacc 571
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aagtgagagtcaaggaatgcaaatgtgtttccactcatgtctacc 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 970
Length adjustment: 10
Effective length of query: 561
Effective length of database: 960
Effective search space:   538560
Effective search space used:   538560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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