BAC Information

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BAC

Clone NameMSMg01-065G17
Chromosome4 (Build37)
Map Location 64,659,223 - 64,659,786
singlet/doubletsinglet
Overlap genenone
Upstream geneTnc
Downstream genePappa, Astn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065G17.T7 (MSMg01no065_g17.b1)MSMg01-065G17.TJ (MSMg01no065_g17.g1)
ACCAG290634AG290635
length679674
length of high quality
(start - end)
606 (45 - 650)564 (72 - 635)
definitionCHROMAT_FILE: MSMg01no065_g17.b1 PHD_FILE: MSMg01no065_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:55 2005CHROMAT_FILE: MSMg01no065_g17.g1 PHD_FILE: MSMg01no065_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGACGAATACCGAATGGCAGAGAAGCACCTGAATAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTATCGTAGGATCCAGCAATACCTCTCCTGGGCAT
TTATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGANATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGG
AACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTA
GGATACCCAAGATATAAGATACAATTTCA
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTACAAACTAGGGAATACAATGAGACAA
ACCAATGTTCATTATGCCACTTGCTATCTTACGTATGGAGGTCAAGAGCG
CAGAAACACTAACATATTGAGGGTAGATGTTGAGGCTGGACAGATGCCTA
ATGGCAGATGTCTTTGTATTAAGTAATTCCACTCACTGGTGCCAACACAA
ATGAACAACCAGGAAAGTTTACTTATGACCAGCATAGTATGTGAATTAGA
GTGTACCATTTTGGAAAGAAGTTGTCTCTCATAGTCTTTCTTGTGATAGC
TACAGTGTTCAAGCACTCTTATTAAAGTAGGATGATGGCTAGATTTCAGA
AGATCCTCGAAATTGGATAAGGAATATCAATTCCTAATCGAAATTGGATT
AGGAATCTAAAATTAATCAACAACCACTTTTCTTATTCTTTGTTCTCTTT
CTTTCTTCATTTGTTCTTTCCTATGTATTTACATTCAAAAATAACTTACT
GTATACNATTTCTCTGAAATCTACACAGTTAACATCTCTTAAAAACATTT
AAGCTCAATGAATTTGAATGATATTTTAAAGTTAGATGCTACAGCCAGCC
ATCTCTAATTTGGACTAAGTTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_g17.g1 MSMg01no065_g17.g1 CHROMAT_FILE:
MSMg01no065_g17.g1 PHD_FILE: MSMg01no065_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:55 2005
         (564 letters)



>mm_chr4_64659023_64659986
          Length = 964

 Score = 1062 bits (549), Expect = 0.0
 Identities = 560/564 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attacaaactagggaatacaatgagacaaaccaatgttcattatgccacttgctatctta 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 attacaaactagggaatacaatgagacaaaccaatgttcactatgccacttgctatctta 260

                                                                       
Query: 61  cgtatggaggtcaagagcgcagaaacactaacatattgagggtagatgttgaggctggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtatggaggtcaagagcgcagaaacactaacatattgagggtagatgttgaggctggac 320

                                                                       
Query: 121 agatgcctaatggcagatgtctttgtattaagtaattccactcactggtgccaacacaaa 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 agatgcctaatggcagatgtctttgtattaagtaattctactcactggtgccaacacaaa 380

                                                                       
Query: 181 tgaacaaccaggaaagtttacttatgaccagcatagtatgtgaattagagtgtaccattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaacaaccaggaaagtttacttatgaccagcatagtatgtgaattagagtgtaccattt 440

                                                                       
Query: 241 tggaaagaagttgtctctcatagtctttcttgtgatagctacagtgttcaagcactctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaaagaagttgtctctcatagtctttcttgtgatagctacagtgttcaagcactctta 500

                                                                       
Query: 301 ttaaagtaggatgatggctagatttcagaagatcctcgaaattggataaggaatatcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaagtaggatgatggctagatttcagaagatcctcgaaattggataaggaatatcaat 560

                                                                       
Query: 361 tcctaatcgaaattggattaggaatctaaaattaatcaacaaccacttttcttattcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcctaatcgaaattggattaggaatctaaaattaatcaacaaccacttttcttattcttt 620

                                                                       
Query: 421 gttctctttctttcttcatttgttctttcctatgtatttacattcaaaaataacttactg 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttctctttcttttttcatttgttctttcctatgtatttacattcaaaaataacttactg 680

                                                                       
Query: 481 tatacnatttctctgaaatctacacagttaacatctcttaaaaacatttaagctcaatga 540
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatacaatttctctgaaatctacacagttaacatctcttaaaaacatttaagctcaatga 740

                                   
Query: 541 atttgaatgatattttaaagttag 564
           ||||||||||||||||||||||||
Sbjct: 741 atttgaatgatattttaaagttag 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)