Query= MSMg01no065_j05.b1 MSMg01no065_j05.b1 CHROMAT_FILE:
MSMg01no065_j05.b1 PHD_FILE: MSMg01no065_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:07 2005
(298 letters)
>mm_chr4_56346299_56346996
Length = 698
Score = 545 bits (282), Expect = e-160
Identities = 288/290 (99%), Gaps = 1/290 (0%)
Strand = Plus / Minus
Query: 6 gaatt-aaaccttgtcgtccggctcggtctttttaattgtggcaaattgtgatttcctgt 64
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gaattcaaaccttgttgtccggctcggtctttttaattgtggcaaattgtgatttcctgt 612
Query: 65 tttctttccggggtagggacaagactgaagaaaaggccccgtaaggatacttggacacca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tttctttccggggtagggacaagactgaagaaaaggccccgtaaggatacttggacacca 552
Query: 125 aagggctcttacaaaagagcatttttgatgatttgagtagaaataaattagaaacatgct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aagggctcttacaaaagagcatttttgatgatttgagtagaaataaattagaaacatgct 492
Query: 185 acagtacttgatgccttttaaagtcccagtaaggttaaaaatgaagagccagggaggagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 acagtacttgatgccttttaaagtcccagtaaggttaaaaatgaagagccagggaggagc 432
Query: 245 tggagacagaaaaacctgatgcatgaaatatcttcagacctcttggaaca 294
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tggagacagaaaaacctgatgcatgaaatatcttcagacctcttggaaca 382
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space: 199121
Effective search space used: 199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_j05.g1 MSMg01no065_j05.g1 CHROMAT_FILE:
MSMg01no065_j05.g1 PHD_FILE: MSMg01no065_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:07 2005
(197 letters)
>mm_chr4_56181528_56182124
Length = 597
Score = 311 bits (161), Expect = 1e-89
Identities = 188/197 (95%)
Strand = Plus / Plus
Query: 1 gaaacaaaattgaggaagtgagaaaagactgaggggaaaggacagtgggtatgcaggaag 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaacaaaattgagaaagtgagaaaagactgaggggaaaggacagtgggtatgcaggaag 260
Query: 61 gaggacagtgggaccctgactggtgttgatgactaaaaccctgaatggaacatcagatag 120
||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 261 gaggacagtgggaccctgactggtgttgatggctaaaaccctggatggaacaagagatac 320
Query: 121 ttaatatataggattacaaccatagagttgaggagccattgctcacttaatgtggaaata 180
||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ttaatatatagaattacaaccaaagagttgaggagccactgctcacttaatgtggaaata 380
Query: 181 caaagacttttctcgca 197
|||||||||||||||||
Sbjct: 381 caaagacttttctcgca 397
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space: 111321
Effective search space used: 111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
