BAC Information

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BAC

Clone NameMSMg01-065L16
Chromosome4 (Build37)
Map Location 73,019,925 - 73,020,472
singlet/doubletsinglet
Overlap genenone
Upstream geneAldoa-ps2, EG384113, LOC667713, LOC100039698
Downstream geneOTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774, Jmjd2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065L16.T7 (MSMg01no065_l16.b1)MSMg01-065L16.TJ (MSMg01no065_l16.g1)
ACCAG290869AG290870
length699699
length of high quality
(start - end)
566 (39 - 604)548 (68 - 615)
definitionCHROMAT_FILE: MSMg01no065_l16.b1 PHD_FILE: MSMg01no065_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:19 2005CHROMAT_FILE: MSMg01no065_l16.g1 PHD_FILE: MSMg01no065_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCC
TACTTAGCACAGAGGGGGCATATAGAGTCCCCCTCCTGAAAGACAGGACA
TCAAATGAGGGTTAGGGTGGCCCATAATTGTTCCTGTCTGAATGAACTGC
AGGGACAAAAAATGGAGAAGAGCCTGAGAAAAAGGATATCCAGTGATGGG
CCCAAATTGGGATCCAGCTCAAGGAGAGGCTCCAAGACTATTACTGAGGC
TATGGTGTGCTCACAAAAAGGAGCCTATCATCCTTGCCCTCCGAAATACC
CAACAAGTAGCTGAAAGAGTCAGATGCAGATATTTATACCCAACCAATGG
ACAGAGGCTATGGCTGAATTAGGGAAAAACTAGAAGCTAAGGCAGAGGGT
GGCCCTGTAGAAATACCAGTAGTCTCAACTAACCTGGATCCTTAACATCT
CTCAGCCACCAACCAGGAAGCCTACACCAACTGATATGAGGCCTCAACCC
ATATACTGCAGAGGACTCAATCTGGACTTAGTTAGAGAACAGGAACCTAA
CCCTCTAAAGACTGGAGGTCCCAGGGAGTAGGGAGGTCTGGTGGGGTGGG
GGATGGGAGTGAATGACNCCCCTAAATTCTCGTTGCTATTCCTTTAGGAT
ATAAGCATATCCTCCTTGTGTAACCTGGTATAAACAAATTATTATAATC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGGAAATTCTCAGAGGAATTGAGCAAAAGGCTG
ATGTCAAATTTTGGCCATCCAGTGATGTGGACTAAATACATCTGTATATT
GTATAGAAATCAGTATTAGGTATTTAGTTATGACACCAGAAAATGGACTG
AGAGGAAGGGATTACCAAGTAAATGAGCAAATTTTCAACAGAACAAATGC
AAAAATTATCTCCAAACTTGCCCTTTTTATCACCTGAACTGATTATTGAA
ATACTAACTTGATTTCACTGCTATGAGTCCTGGTGTTCAGTTGTAATGTT
GCTTTTCTGTACACAGCCTTTTGTGCTATTCATGCATGGTAAATTTTACT
GTATGACACACTTTACATTTAGAATTCTTTGTTAATTCTTTGATAATTAC
ATACATGTATTTGATCATATTTACCACAATCCCTTCCATTAATTTATCCC
AGCATTCCCCATCTTTCTAATTTTGTAACTTTGTTAAAAATTACAACTTT
TGTTTTAATGTAATAATCCATTGACCACAAACTATGCTTTCCATATTCAT
GTGGATAATTTCACTGGAGACTAGCTGACCACATCCTTAGAGAAAATTGA
ATCTTTCTTCTAGAATCCATAAACTGTCAACAGCTCTTCAGTTAGCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_l16.g1 MSMg01no065_l16.g1 CHROMAT_FILE:
MSMg01no065_l16.g1 PHD_FILE: MSMg01no065_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:19 2005
         (548 letters)



>mm_chr4_73019725_73020672
          Length = 948

 Score =  951 bits (492), Expect = 0.0
 Identities = 534/548 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaaattctcagaggaattgagcaaaaggctgatgtcaaattttggccatccagtgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 aggaaattctcagaggaattgagcaaaaggctgatgtcaaattttggccatccagtgatg 689

                                                                       
Query: 61  tggactaaatacatctgtatattgtatagaaatcagtattaggtatttagttatgacacc 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tggactaaatacatctgcatattgtatagaaatcagtattaggtatttagttatgacacc 629

                                                                       
Query: 121 agaaaatggactgagaggaagggattaccaagtaaatgagcaaattttcaacagaacaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 628 agaaaatggactgagaggaagggattaccaagtaaatgagcaaattctcaacagaacaaa 569

                                                                       
Query: 181 tgcaaaaattatctccaaacttgccctttttatcacctgaactgattattgaaatactaa 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tgcaaaaattatctccaatcttgccctttttatcacctgaactgattattgaaatactaa 509

                                                                       
Query: 241 cttgatttcactgctatgagtcctggtgttcagttgtaatgttgcttttctgtacacagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||
Sbjct: 508 cttgatttcactgctatgagtcctggtgttcagttgtaatgttgcttttctgttcttagc 449

                                                                       
Query: 301 cttttgtgctattcatgcatggtaaattttactgtatgacacactttacatttagaattc 360
           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cttttgggctattcatgaatggtaaattttactgtatgacacactttacatttagaattc 389

                                                                       
Query: 361 tttgttaattctttgataattacatacatgtatttgatcatatttaccacaatcccttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tttgttaattctttgataattacatacatgtatttgatcatatttaccacaatcccttcc 329

                                                                       
Query: 421 attaatttatcccagcattccccatctttctaattttgtaactttgttaaaaattacaac 480
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 328 attaatttatcccagcattccccatctttctaattttgtaaccttgttaaaaattacaac 269

                                                                       
Query: 481 ttttgttttaatgtaataatccattgaccacaaactatgctttccatattcatgtggata 540
           |||||| |||||||||||| |||||| |  ||||||||||||||||||||||||||||||
Sbjct: 268 ttttgtgttaatgtaataacccattgtctgcaaactatgctttccatattcatgtggata 209

                   
Query: 541 atttcact 548
           ||||||||
Sbjct: 208 atttcact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)