BAC Information

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BAC

Clone NameMSMg01-065M09
Chromosome4 (Build37)
Map Location 13,645,686 - 13,646,127
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000004461, LOC100039988
Downstream geneRunx1t1, LOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065M09.T7 (MSMg01no065_m09.b1)MSMg01-065M09.TJ (MSMg01no065_m09.g1)
ACCAG290903AG290904
length683677
length of high quality
(start - end)
463 (42 - 504)532 (70 - 601)
definitionCHROMAT_FILE: MSMg01no065_m09.b1 PHD_FILE: MSMg01no065_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:22 2005CHROMAT_FILE: MSMg01no065_m09.g1 PHD_FILE: MSMg01no065_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAA
TTCTGTGATCTCACCAAATCATCATGTGATGGATGGATTGGGCCCTGCTT
AAGCCAGGGCTTCGCTGGGTGGTGTAACATGGAATGAGGCCTGCAGCCTG
AGTACACTTATTTTCTGGAACCTGGCTTGCTTTCCATTGTCTGTCTCCAA
GAATTGCCTATTTGAATAATTATGGTATATACTTGTTCTCTAGAACATAG
TTAGTTTTTAATAGTGTGTCTCCAAGAGTTGTGTATTTTAATAATTATAT
TATATAGTGGTCTATGTATATTTTAGGTAGAAATTATCCTTTTCTTCAAA
TTTGCAGAGACTCAAAGTAGTTCTGAGATGATGAGAAGATGGTACAGAGT
CCAGTGTCCAAGGAACCACGGCCTGCATTTTGCTCTCCGAAATTCTATTC
CCATTCTCTATAAGATCTTCCCCAACCAGGTGTTTTAGAATGACATGTGC
TGACAACTTACAGCAGATGATGGAAGAGATCCCTATTTGTGCTGAAGAAT
ACTGACAGAACATAATTTCGAAATTAACTTACTATACAAATTCTTCAGTT
TATGGTCACTCACACCATTTTGATTGCTCAGAGACATCTAGTCTGTCTTC
CTTATTATTAACAGAATCACTACCGGATTTCTC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGTTTAGCTTTGTTCCCCATTTTTAATAG
GGTTATTTGGTTCTCTGGAGTCTAACTTCTTGAGTTCTTTGTATATATTG
GATATTAGCCCTCTATCAACCAATCTGTTGGCTGCCATTTTGTCCTATTA
AAAGTTTCCTTTGCCTTACAAAAGCGTTGCAAATTTGTGAGGTTCCATTT
GTCAATTCTTGATCTCAGAGCATAAGCCATTAGTGTTCTGTTCAAGAACT
TTTCTCCTGTGCCCATGAATTTGAGACTTTTCCCCCACTTTCTCCATTAG
ATTCAGTGTATCTGTTTGTATATGAAGGTCCTTGATCCACTTGAACTTGA
GCTATGCACACCCAGATAAGAATGGATCAATTTGCATTCTTCTACATGTT
GACTGCCAGTTGAACCAGTACCATTTGTTGAAAATGCTTTCTTTTTTCCA
CTGGATGGTTTTAGCTCCTTTGTCAAAGATCAAGTGATCATACGAATGTG
GGTTCATTTCTGGGTCTTCAATTTTATTCCATTGATCTACCTTCCTGTAA
CTGTACCAATACCATGCAGTTTTTAATCACAATTGTTCTGTAGTACAGCT
TGAGGTCAGGGATGGTGATTTCCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_m09.b1 MSMg01no065_m09.b1 CHROMAT_FILE:
MSMg01no065_m09.b1 PHD_FILE: MSMg01no065_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:22 2005
         (463 letters)



>mm_chr4_13645686_13646548
          Length = 863

 Score =  795 bits (411), Expect = 0.0
 Identities = 436/447 (97%), Gaps = 5/447 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctgtgatctcaccaaatcatcatgtgatggatggattgggccctgcttaagccag 66
           ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 442 gaattctgtgaactgaccaaatcatcatgtgatgggtggattgggccctgcttaagccag 383

                                                                       
Query: 67  ggcttcgctgggtggtgtaacatggaatgaggcctgcagcctgagtacacttattttctg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggcttcgctgggtggtgtaacatggaatgaggcctgcagcctgagtacacttattttctg 323

                                                                       
Query: 127 gaacctggcttgctttccattgtctgtctccaagaattgcctatttgaataattatggta 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaacctggcttgctttccattgtctgtctccaagaattgcctatttgaataattatggta 263

                                                                       
Query: 187 tatacttgttctctagaacatagttagtttttaatagtgtgtctccaagagttgtgtatt 246
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 262 tatacttgttctctagaacatagttagtttttaatagtgtgtctccaagaattgtgtatt 203

                                                                       
Query: 247 ttaataattatattatatagtggtctatgtatattttaggtagaaattatccttttcttc 306
           |||||||||||||     ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttaataattatat-----agtggtctatgtatattttaggtagaaattatccttttcttc 148

                                                                       
Query: 307 aaatttgcagagactcaaagtagttctgagatgatgagaagatggtacagagtccagtgt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 147 aaatttgcagagactcaaagtagttctgagatgatgagaagatggtacagaatccagtgt 88

                                                                       
Query: 367 ccaaggaaccacggcctgcattttgctctccgaaattctattcccattctctataagatc 426
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  ccaaggaagcacggcctgcattttgctctccgaaattctattcccattctctataagatc 28

                                      
Query: 427 ttccccaaccaggtgttttagaatgac 453
           |||||||||||||||||||||||||||
Sbjct: 27  ttccccaaccaggtgttttagaatgac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)