BAC Information

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BAC

Clone NameMSMg01-065P18
Chromosome4 (Build37)
Map Location 151,602,268 - 151,602,571
singlet/doubletsinglet
Overlap geneAcot7
Upstream geneCamta1, LOC100041960, Dnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2
Downstream geneGpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065P18.T7 (MSMg01no065_p18.b1)MSMg01-065P18.TJ (MSMg01no065_p18.g1)
ACCAG291065AG291066
length690714
length of high quality
(start - end)
329 (62 - 390)192 (72 - 263)
definitionCHROMAT_FILE: MSMg01no065_p18.b1 PHD_FILE: MSMg01no065_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:38 2005CHROMAT_FILE: MSMg01no065_p18.g1 PHD_FILE: MSMg01no065_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATTTGCGGCGCTAAACGACTCCTATTGCAAGAAGAGCGCGGAATTCC
ACATTCTCCAGAAAGCCCTGTAGGGACTTTAGAGAGGACTTCAGCTCAGA
GCACTTGCCCAGTGGCACAAAGTGCTGTTTCTACACACAACGCTACAAAA
ACAAGGATGAGCACTGGCTAGAGGGACAGCTCAGAGGATATGAGCACTAG
CTGCTCTCACAGGGGACCCGGCACCCACACATTGTCTCATAGCCGTCTGT
AACTCTAGTCTCAGGGGATTCCACACTCTCCTGGCCTGTACAGGGCACTT
CACACATGGTTAGCACAGACATACATTCAGGCAAACACTCATACACATAA
TACAAAAACAGAATCTCAAAAAAGGAAAGGTTTAAGCCAAGCACAGTGGT
ATCACACCTGGAATCCTAGCTCACAGGAGACTGAGACAAGAAGGCAGGAC
TATAGAACAAGGGTTTACCATATTGAAGAAGAAGGCAGACAAATGTGCAC
TAGGGAAAGGCAGCTGCAGCCAAGCCTGATAACCCGAGTCTTGACCTCTG
GACCCCCGTGGTAAAAAAGAGAGGACTGACTCCTGCAGACTGTGCTCTGA
CCTCGCAGACTGGCATGCAGGCTCATACCTAACCACATACACAGTAATAC
ACAGAATTTAATAATTATTCAGAGCCAGGCGGCGGTGCCC
ATGCTGTGTTAGGCCTGGCGGACGCCTGATACCCCACCTGAGGTGACACT
ATAGAAGTACCCAAAAAATTCCAAAGCTCACACAGTCGCACTTGCACAGA
CTGTCTGCAGTTGGCAAAAGCATCCTTTGCCAGGGTGTGAGGGAATCATA
GTCGGCTGCTTTGGGCAGGTGTAAACCACACCATAAGCCTGCCTGGGATT
AAAACAAAAAGCATACTCTTAAAATAGTTCTGTGGTTTGTTTGTTGTTTG
TTTGTTTGTTTGTTTGTTTTTTTTTTTTCTTCGTTTCCCTGTCGCCCTTT
TTATCTCCCTTTTTTTTTCTTATTCCATTTTCTTCATACTCATTTTATCT
ATTTTTTATCTCCTCCCCTACGTCCACTAAATTATCTTGTTCCTCCTTAT
TATACTTTGGTTTTACCATCCACTTTTTTTATTATTAATTTCATTTCCTA
ACGTCATTATTGTTTACCTATCTGTTTTCATATTTTCTCCTCACTAATTT
TTATTTATTTATAATTAATTATTCTTACGTACTTACCTATATTTATTAAT
CACTAACTCTATCACTCAACCAATTTCTATTATCCTTATTATCCCTCATT
CTCTGCATTTTTTATCTTCATTATTATTTTATTATTCTTACTTTTTTTTT
TTTTTATTAATTCCCATTTTTCCCACTTTTTGACCCCATTTCTCATTTCT
TCCCCTATTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_p18.b1 MSMg01no065_p18.b1 CHROMAT_FILE:
MSMg01no065_p18.b1 PHD_FILE: MSMg01no065_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:38 2005
         (329 letters)



>mm_chr4_151602268_151602996
          Length = 729

 Score =  534 bits (276), Expect = e-156
 Identities = 297/304 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagccctgtagggactttagagaggacttcagctcagagcacttgcccagtggcacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aaagccctgtagggactttagagaggacttcagctcagagcacttgcccagtggcacaaa 245

                                                                       
Query: 61  gtgctgtttctacacacaacgctacaaaaacaaggatgagcactggctagagggacagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gtgctgtttctacacacaacgctacaaaaacaaggatgagcactggctagagggacagct 185

                                                                       
Query: 121 cagaggatatgagcactagctgctctcacaggggacccggcacccacacattgtctcata 180
           |||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 184 cagaggatatgagcaccagctgctctcgcaggggacccgacacccacacattgtctcata 125

                                                                       
Query: 181 gccgtctgtaactctagtctcaggggattccacactctcctggcctgtacagggcacttc 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gctgtctgtaactctagtctcaggggattccacactctcctggcctgtacagggcacttc 65

                                                                       
Query: 241 acacatggttagcacagacatacattcaggcaaacactcatacacataatacaaaaacag 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 64  acacatggggagcacagacatacattcaggcaaacactcatacacataaaacaaaaacag 5

               
Query: 301 aatc 304
           ||||
Sbjct: 4   aatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)