BAC Information

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BAC

Clone NameMSMg01-066H09
Chromosome4 (Build37)
Map Location 83,572,238 - 83,654,428
singlet/doubletdoublet
Overlap genenone
Upstream geneFrem1, LOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611, 4930473A06Rik
Downstream geneLOC668010, Bnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066H09.T7 (MSMg01no066_h09.b1)MSMg01-066H09.TJ (MSMg01no066_h09.g1)
ACCAG291428AG291429
length714713
length of high quality
(start - end)		557 (44 - 600)466 (73 - 538)
definitionCHROMAT_FILE: MSMg01no066_h09.b1 PHD_FILE: MSMg01no066_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:15 2005CHROMAT_FILE: MSMg01no066_h09.g1 PHD_FILE: MSMg01no066_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,572,238 - 83,572,791)(83,653,963 - 83,654,428)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTAGATTGATCACCTGTCACCTAGAAGATGGAGACAGACCCCAAAT
CCTGTGTTCTTAAAGGAGAGAATTAACGAGGCCTCCGAGTTGTCTTGGTG
CCTGTTTCAGAATGGCCCGTGGCTGAGAGAGCCAGTGTCTGCGGGGCTTC
GGGCGGTCAAGCTGCCCTGAATGTGACCTGTCAGGGGTTGTTTGTGATCT
TTGTGCCCAGTGATGCAGGTCACAGGCAGTGTTCCTCCCAAGGATCTGAT
TGTTTGCAGTTGTGAAGAGCAGGAGCTTGGATCTGTCCGAGCAGAGGGTT
AAATCATGGAGTGTTTTACAAGAGCGGCTATAGGGAATGCCGTGTTTTCT
CCTTATATGGTTATTTTTCTCAGTCCAAAATCCCAGGGTGTATTTTACGT
GGTTGAAATACACAAATGGAGTCACAGTCTTAGCCAAACATGCTATGTGG
CTTTAAAATTAACAAGCCTCCCTCTACTTCTGTACCCTAAACACACCCTG
GAGCAGCAGTTTCTGTTGAGACTGAGGAAAAGAAAGACTCTTGCCTTTTT
AGCCACCAACAATATTTGCCTGGGATGAGCTTCTCTAATCCCACTGCTGC
CTTCTGCATGAAGATATTTTTTCTGTGCTAGCGTCGGTGGGTCAAATCAA
AGTGTCGCAGTTTT

AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTCTGAACAAGTGGGGAGCTTGTCCAG
TTATTCTTTCCTGTAACTCTCTCAGGGCTGCTGAAGCGGATGGTTCCTGT
TTGAAGCTTCAGACCCGGGGAACACAGCAGCCCACGGTGACAGTTTCTTA
TTTCAAGAAACCTCACACTTGAAGGTACTTTGAAGAACACATATTTTTGA
GACTAACTAAATATTTGGGCTGTGTCTTTCCAGCCTTTCTTTCCACTCTA
AAAGCAAAAACAAGTCTCTGTAATTTGGTGAAGGAATTGACTTGGATGAA
AGAGAGACTAACTTGGTAACCACATATGGGAAAGTGCCCTGAAGTCCTCA
TTTCCGACACACATCTTTGGCGGTATCTGCAAGTTTCCAGTGAATCACCA
AGAAAACACAGCCAATCCCCTTCAGTGACCTTGCGGTTGCTATGTGAAAA
GGTCGGTGTGAACCACCCTCTTCACACCACAAACTCGCTATTCAGAAAGC
CAAGTTAGGATTACATAGGAAACCATATAGACAGTTCCACCACAAACTAT
CTGATACCACAATCAACGTTACAGACTGCATGCATTCCGTATGACCATGA
CGGGTGAAGTTAAGCTTTATCTTATGGCTGATAGTTTGTGTCCCTCTCTG
ACTTTCTTCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_h09.b1 MSMg01no066_h09.b1 CHROMAT_FILE:
MSMg01no066_h09.b1 PHD_FILE: MSMg01no066_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:15 2005
         (557 letters)



>mm_chr4_83572035_83572991
          Length = 957

 Score = 1056 bits (546), Expect = 0.0
 Identities = 552/554 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtagattgatcacctgtcacctagaagatggagacagaccccaaatcctgtg 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtagattgatgacctgtcacctagaagatggagacagaccccaaatcctgtg 263

                                                                       
Query: 64  ttcttaaaggagagaattaacgaggcctccgagttgtcttggtgcctgtttcagaatggc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttcttaaaggagagaattaacgaggcctccgagttgtcttggtgcctgtttcagaatggc 323

                                                                       
Query: 124 ccgtggctgagagagccagtgtctgcggggcttcgggcggtcaagctgccctgaatgtga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccgtggctgagagagccagtgtctgcggggcttcgggcggtcaagctgccctgaatgtga 383

                                                                       
Query: 184 cctgtcaggggttgtttgtgatctttgtgcccagtgatgcaggtcacaggcagtgttcct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctgtcaggggttgtttgtgatctttgtgcccagtgatgcaggtcacaggcagtgttcct 443

                                                                       
Query: 244 cccaaggatctgattgtttgcagttgtgaagagcaggagcttggatctgtccgagcagag 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 cccaaggatctgattgtttgcagttgtgaagtgcaggagcttggatctgtccgagcagag 503

                                                                       
Query: 304 ggttaaatcatggagtgttttacaagagcggctatagggaatgccgtgttttctccttat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggttaaatcatggagtgttttacaagagcggctatagggaatgccgtgttttctccttat 563

                                                                       
Query: 364 atggttatttttctcagtccaaaatcccagggtgtattttacgtggttgaaatacacaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atggttatttttctcagtccaaaatcccagggtgtattttacgtggttgaaatacacaaa 623

                                                                       
Query: 424 tggagtcacagtcttagccaaacatgctatgtggctttaaaattaacaagcctccctcta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggagtcacagtcttagccaaacatgctatgtggctttaaaattaacaagcctccctcta 683

                                                                       
Query: 484 cttctgtaccctaaacacaccctggagcagcagtttctgttgagactgaggaaaagaaag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cttctgtaccctaaacacaccctggagcagcagtttctgttgagactgaggaaaagaaag 743

                         
Query: 544 actcttgccttttt 557
           ||||||||||||||
Sbjct: 744 actcttgccttttt 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no066_h09.g1 MSMg01no066_h09.g1 CHROMAT_FILE:
MSMg01no066_h09.g1 PHD_FILE: MSMg01no066_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:15 2005
         (466 letters)



>mm_chr4_83653763_83654628
          Length = 866

 Score =  878 bits (454), Expect = 0.0
 Identities = 463/466 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctgaacaagtggggagcttgtccagttattctttcctgtaactctctcagggctgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 attctgaacaagtggggagcttgtccagttattctttcctgtaactctctcagggctgct 607

                                                                       
Query: 61  gaagcggatggttcctgtttgaagcttcagacccggggaacacagcagcccacggtgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gaagcggatggttcctgtttgaagcttcagacccggggaacacagcagcccacggtgaca 547

                                                                       
Query: 121 gtttcttatttcaagaaacctcacacttgaaggtactttgaagaacacatatttttgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gtttcttatttcaagaaacctcacacttgaaggtactttgaagaacacatatttttgaga 487

                                                                       
Query: 181 ctaactaaatatttgggctgtgtctttccagcctttctttccactctaaaagcaaaaaca 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 486 ctaactaaatatttgggctgtgtcttcccagcctttctttccactctaaaagcaaaaaca 427

                                                                       
Query: 241 agtctctgtaatttggtgaaggaattgacttggatgaaagagagactaacttggtaacca 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 426 agtctctgtaatttggtgaagaaattgacttggatgaaagagagactaacttggtaaccg 367

                                                                       
Query: 301 catatgggaaagtgccctgaagtcctcatttccgacacacatctttggcggtatctgcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 catatgggaaagtgccctgaagtcctcatttccgacacacatctttggcggtatctgcaa 307

                                                                       
Query: 361 gtttccagtgaatcaccaagaaaacacagccaatccccttcagtgaccttgcggttgcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtttccagtgaatcaccaagaaaacacagccaatccccttcagtgaccttgcggttgcta 247

                                                         
Query: 421 tgtgaaaaggtcggtgtgaaccaccctcttcacaccacaaactcgc 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tgtgaaaaggtcggtgtgaaccaccctcttcacaccacaaactcgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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