BAC Information

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BAC

Clone NameMSMg01-066L12
Chromosome4 (Build37)
Map Location 134,150,782 - 134,150,908
singlet/doubletsinglet
Overlap geneMan1c1
Upstream geneSfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1
Downstream geneLdlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066L12.T7 (MSMg01no066_l12.b1)MSMg01-066L12.TJ (MSMg01no066_l12.g1)
ACCAG291625AG291626
length686768
length of high quality
(start - end)
74 (51 - 124)183 (133 - 315)
definitionCHROMAT_FILE: MSMg01no066_l12.b1 PHD_FILE: MSMg01no066_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:36 2005CHROMAT_FILE: MSMg01no066_l12.g1 PHD_FILE: MSMg01no066_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGCGGCCGCCTGTTTCACAAATTGAGGTGAACTATAGAATTATCAGCGA
AATTCCTGGCTTCCCTCCTGGTCCCTCCTGCTGACTGGGGCAGAGGCTGG
GGCCTGGCTGGGGGGGGGGGCCCTGCAAGTTCGTGTCACCGCAGCTGATT
CCTAGTTGTTCTCCTGACTCTCGCTAACTGAACTGCTGGCGTATCTGTAA
AGGGTTTGTGAGTGTATCAAGTTGCCCCTGCTGACCTGTGAACTGAACGG
TTGATTTCCAAACAACAAAGATGGTAGTTGCTCCAAAAAACCTTCCTCTT
TTTCCCCATAGCCTTTCTTTTCCATTACCTCTGTTGGTTGGAGACCCCAC
AAGAAGTATCATAGTCCTTAAAAACCATCTATTATAAACAGGTTTCCACA
CTATTATTTTTTATTTTCCTCTCTACAATCTTCTTTCTCCCTCTTTTCTT
CTTCCCGCTCTTCTTTCGTTTATTCTTATCCTTTCACTTTCTATTATTGA
CTTTTCCCTTTTCTCTTATACAATATTTCCCATTATACCATATTCCACCT
ATTACCCTTTTCCAACTCTTTTTTCTTTTTTCTCTCCTCCTCCTTAATTT
TCTACTTTTTTTTTCCAGCCCTTTTCCCATTTATTTTTCCTTTTTTTTTT
TTCCTCACTCCTTATTTTTTTCCTCTTCATCCCCCT
NCCCCCCCCCCCNCNCCNCCNCCCTCNCCNCCCCCNCCTCCATCCCNNNT
ACTANNAANGCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTA
GAAGACCGCGGAATTCTTACCCTTGCCACCACAGCCACTGTGAATTCTTA
CCCATGCTACCCCAGCCACTGTGAATTCTTACCCATGCTACCCCAGCCAC
TGTGAATTCTTACCCATGCTACCCCAGCCACTGTGAATTCTTACCCATGC
TACCCCAGCCACTGTGAATTCTTACCCATGCTACCCCAGCCACTGTGAAT
TCTTACCCATGCTATCCCAGCTACTGCGAATTCTTACCCATGCTACCCCA
CCCACTGTGAATTCTTACACATGCTTTCCTTTTTACTGTGAATTCGTGCG
TGCAATGACCTTGTTCTGTCCGCCTCACCGTCCTGCTATGCACTTCTGTC
CTGTCTCGTCCTCACATTATTTCCTGCTCTTCTTCCCCCTCGATCTCTGA
CCCTTGCCAGAAGTTTATCAACGCCATATTTTCCTGTATCACTTTGTTTC
CCCTGTTCCCTTACTTTTACTTATCATTTTTTATCCCCTTTTTTACCCCA
TTTCTCTTCTCCCTTTATTTTAATTTTCCACCCTCCATACCATTTAACTC
ATTCTCATGCCTTACCCTCACCCATTTGAACCCTTGATCATATGCTATTT
CCCTCATCTCTAAAATCCCTACTATTTTCTTTCTTTTTCTTTTTCCCTCA
ATATATTATTATATCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_l12.g1 MSMg01no066_l12.g1 CHROMAT_FILE:
MSMg01no066_l12.g1 PHD_FILE: MSMg01no066_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:36 2005
         (183 letters)



>mm_chr4_134150527_134151109
          Length = 583

 Score =  215 bits (111), Expect = 2e-60
 Identities = 123/127 (96%)
 Strand = Plus / Minus

                                                                       
Query: 44  ttcttacccatgctaccccagccactgtgaattcttacccatgctaccccagccactgtg 103
           ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 382 ttcttacgcatgctaccccagccactgtgaattcttacgcatgctaccccagccactgtg 323

                                                                       
Query: 104 aattcttacccatgctaccccagccactgtgaattcttacccatgctaccccagccactg 163
           ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 322 aattcttacgcatgctaccccagccactgtgaattcttacgcatgctaccccagccactg 263

                  
Query: 164 tgaattc 170
           |||||||
Sbjct: 262 tgaattc 256



 Score =  215 bits (111), Expect = 2e-60
 Identities = 123/127 (96%)
 Strand = Plus / Minus

                                                                       
Query: 13  ttcttacccatgctaccccagccactgtgaattcttacccatgctaccccagccactgtg 72
           ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 382 ttcttacgcatgctaccccagccactgtgaattcttacgcatgctaccccagccactgtg 323

                                                                       
Query: 73  aattcttacccatgctaccccagccactgtgaattcttacccatgctaccccagccactg 132
           ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 322 aattcttacgcatgctaccccagccactgtgaattcttacgcatgctaccccagccactg 263

                  
Query: 133 tgaattc 139
           |||||||
Sbjct: 262 tgaattc 256



 Score =  186 bits (96), Expect = 8e-52
 Identities = 105/108 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccactgtgaattcttacccatgctaccccagccactgtgaattcttacccatgctacc 60
           ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 363 agccactgtgaattcttacgcatgctaccccagccactgtgaattcttacgcatgctacc 304

                                                           
Query: 61  ccagccactgtgaattcttacccatgctaccccagccactgtgaattc 108
           ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 303 ccagccactgtgaattcttacgcatgctaccccagccactgtgaattc 256



 Score =  178 bits (92), Expect = 2e-49
 Identities = 104/108 (96%)
 Strand = Plus / Minus

                                                                       
Query: 75  ttcttacccatgctaccccagccactgtgaattcttacccatgctaccccagccactgtg 134
           ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 382 ttcttacgcatgctaccccagccactgtgaattcttacgcatgctaccccagccactgtg 323

                                                           
Query: 135 aattcttacccatgctaccccagccactgtgaattcttacccatgcta 182
           ||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 322 aattcttacgcatgctaccccagccactgtgaattcttacgcatgcta 275


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)