BAC Information

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BAC

Clone NameMSMg01-067G13
Chromosome4 (Build37)
Map Location 140,308,184 - 140,308,418
singlet/doubletsinglet
Overlap genePadi4
Upstream genePax7, Gm1667, Klhdc7a, Igsf21, LOC100040728, Arhgef10l, Rcc2, Padi6
Downstream genePadi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067G13.T7 (MSMg01no067_g13.b1)MSMg01-067G13.TJ (MSMg01no067_g13.g1)
ACCAG292150AG292151
length684691
length of high quality
(start - end)
284 (68 - 351)235 (127 - 361)
definitionCHROMAT_FILE: MSMg01no067_g13.b1 PHD_FILE: MSMg01no067_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:30 2005CHROMAT_FILE: MSMg01no067_g13.g1 PHD_FILE: MSMg01no067_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTCTAAAATTGCGGCGCTATACGACTCCTATAGGCAGAGATCCGCGGAA
TTCCAACATCTTTCACTCACAGAAACTATCTGCAGCTGGCAAAATCACAC
CTCTGCTAGAGCCCGAGGCAACCATCGTCGGCTCCTTGAAGCAGCCTCTT
ATCCCAACCTGGGATTAAAACAAAAACACATTCTTACAATATTTCTGTGT
TTTTTAAAGAAACCAAAATTCTCACTACAGATTTGTTTATTCTTATTCTA
TATGCGTTGGTGCTCTGCCTAAATGTGTGTGTGAGGGTCACAGATCCCTT
AGAACTGGAGTTTCAGTTGTGGGCCACCATGTGGTTGCTGGGAAATGAGC
CCAGGTCTTCTTGAAGTGCGCTCCGACCTCTTAACCACTGAGCCATCACT
CCAGCCCCTCAGTTAGCTTTGTTATACAGCCCAGATCCACCACCCTTTAC
TGCCTAATGGGCTAGGCTGTTCCAGATCGATAATCATGAAAATGCCCAAC
AGACCTGGCCACAGGTCAATGTATATCTCATTTGATTGTCCCTCTTTCCA
GCTTTCGAAAGCTTGAGCCCAAAAGACATAGATCTAACAGTCCACATTTC
GGGAATATTTCAGAGTTCCAATGAACATCCCCCCCGGCCACCCAGTGCTT
GCCCCCGTCTTTCCCAACTGTACTTTCCATTAAG
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATCGGGAATAGCGGTTACTCCAGG
TAAGGAGAAGAACATGGGTGTGCCCGGGGTAGGGGACAGTGACAAAGGCC
ACAGTAAGGCCTCCCCTATGTTCTCCAAACCTAAGAGGTCAGCAAACATT
GAGAGGAAGCCACCTGGAGGGTACGGAACCTCCAGAGCCTACCTCTACCC
ACTTGTATGCCTTCAGGAGATGACTGTTTACTGAAGACCTACTATGTGCC
AGAAGCTGGGGTTAGATCAGTGAGTGTGTCACACCAGAGAAAGCAAACGA
GTAAGATAAAAGATTTTTTTGAACACCCCCCCCCCAATTAGCAGGCCGTG
CGGTGGTGGTACATGCCTTGGAATCCCAAAACTTGGAAGGCAGAGGCAGC
AGATTTCTGAGTTCGAGGCCAGCCTGTTCTACAGAGTGGATTCCAGGACA
GCCAGCGCTATACAGAGAATCCCTGTCTCAGGGGGGGAAAAAAAATCAAA
ACAAACCAACATATAATATCGTTGCGTAACTCATATATCCTATATAAGCG
CCTTTGTTACCGAGTGGACCTAAAATAGGACAGAACATGGATCTAATGTC
CTTGACGTCAGAATTGAAATTCCGTGGTGGTGGTTAAAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_g13.g1 MSMg01no067_g13.g1 CHROMAT_FILE:
MSMg01no067_g13.g1 PHD_FILE: MSMg01no067_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:30 2005
         (235 letters)



>mm_chr4_140307984_140308618
          Length = 635

 Score =  455 bits (235), Expect = e-132
 Identities = 235/235 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggtaggggacagtgacaaaggccacagtaaggcctcccctatgttctccaaacctaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gggtaggggacagtgacaaaggccacagtaaggcctcccctatgttctccaaacctaaga 376

                                                                       
Query: 61  ggtcagcaaacattgagaggaagccacctggagggtacggaacctccagagcctacctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggtcagcaaacattgagaggaagccacctggagggtacggaacctccagagcctacctct 316

                                                                       
Query: 121 acccacttgtatgccttcaggagatgactgtttactgaagacctactatgtgccagaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 acccacttgtatgccttcaggagatgactgtttactgaagacctactatgtgccagaagc 256

                                                                  
Query: 181 tggggttagatcagtgagtgtgtcacaccagagaaagcaaacgagtaagataaaa 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tggggttagatcagtgagtgtgtcacaccagagaaagcaaacgagtaagataaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)