Query= MSMg01no067_i24.b1 MSMg01no067_i24.b1 CHROMAT_FILE:
MSMg01no067_i24.b1 PHD_FILE: MSMg01no067_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:42 2005
(319 letters)
>mm_chr4_14864071_14864788
Length = 718
Score = 571 bits (295), Expect = e-167
Identities = 311/317 (98%), Gaps = 3/317 (0%)
Strand = Plus / Plus
Query: 5 gaattcaagtctaattgcgcaacttataaccatgatgggacctctgggaccaacatggtg 64
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 203 gaattcaagtctaattgggcaacttataaccatgatgggacctctggaaccaacatggtg 262
Query: 65 gaaagagagaggtgactcctgcaagttgtgctctgacctatacatgtatgtgtacgtgta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaaagagagaggtgactcctgcaagttgtgctctgacctatacatgtatgtgtacgtgta 322
Query: 125 tatacactcacatgtgcatgcacacacacacacacac--tgaataagtagataaatttaa 182
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 323 tatacactcacatgtgcatgcacacacacacacacacactgaataagtagataaatttaa 382
Query: 183 taaaaaattaaaaatacaaactggctaagagatataactcagaatgcttgcctgacacat 242
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 383 taaaaaattaaaaatacaaactggcta-gagatataactcagaatgcttgcctgacacat 441
Query: 243 gtgagttccttccctgctcaaccccttcccaatcttaaacagtttcctttctgttcacaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gtgagttccttccctgctcaaccccttcccaatcttaaacagtttcctttctgttcacaa 501
Query: 303 aactgtgcttcggacat 319
|||||||||| ||||||
Sbjct: 502 aactgtgctttggacat 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space: 219790
Effective search space used: 219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no067_i24.g1 MSMg01no067_i24.g1 CHROMAT_FILE:
MSMg01no067_i24.g1 PHD_FILE: MSMg01no067_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:42 2005
(470 letters)
>mm_chr4_14989226_14990096
Length = 871
Score = 803 bits (415), Expect = 0.0
Identities = 457/471 (97%), Gaps = 1/471 (0%)
Strand = Plus / Minus
Query: 1 ctactctgatg-cttagccatgggtccttctgtttttaaaccagacctgacttggaagac 59
||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 671 ctactctgatgtattagccatgggtccttttgtttttaaaccatacctgacttggaagac 612
Query: 60 tgagttacagaataaaatctaaaatccagcactactaatactatgcagtgaggaatggag 119
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 611 tgagtcacagaataaaatctaaaagccagcactactaatactatgcagtgaggaatggag 552
Query: 120 aaagtaacctcttgtgagcattttattagtgaaggtgttgtgctgattatgcacaggaag 179
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 551 aaagtaacctctagtgagcattttattagtgaaggtgttgtgctgattatgcacgggaag 492
Query: 180 ataatctgctttgtggaagatggtgttcttaaagtatctgtttatgaattgcattctttt 239
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 491 ataatctgctttgtggaagatggtgttcttaaagtatctgtttatgagttgcattctttt 432
Query: 240 cttccattgacacatccagtgtcaagactatttttctaaagtcctttatgtcaactgaca 299
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 431 cttccattgacacatccagtgtcaagactatttttctaaagtccttcatgtcaactgaga 372
Query: 300 aaaactggctctaagttttctatgaaggctgtatgactatgcttttggcaaatccatgtc 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 371 aaaactggctctaagttttctatgaaggctgtatgactatgtttttggcaaatccatgtc 312
Query: 360 ccatatctgtgtatttcaataaaagtacgttttattttctcttgttacccaaagacaagt 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 311 ccatatctgtgtatttcaataaaagtaggttttattttctcttgttacccaaagacaagt 252
Query: 420 gcttaaagagatcaatatatgctttaaacctacttttctccaatgacatca 470
| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gtttaaagagatcaatatatgctttaaacctacttttctccaatgacatca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 871
Length adjustment: 10
Effective length of query: 460
Effective length of database: 861
Effective search space: 396060
Effective search space used: 396060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
