BAC Information

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BAC

Clone NameMSMg01-067L18
Chromosome4 (Build37)
Map Location 78,804,354 - 78,804,659
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039974, LOC100039996, LOC100040026
Downstream geneLOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067L18.T7 (MSMg01no067_l18.b1)MSMg01-067L18.TJ (MSMg01no067_l18.g1)
ACCAG292398AG292399
length671679
length of high quality
(start - end)
314 (42 - 355)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no067_l18.b1 PHD_FILE: MSMg01no067_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:55 2005CHROMAT_FILE: MSMg01no067_l18.g1 PHD_FILE: MSMg01no067_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTGATTATTTCTGTACCCCATTTTAAATTGGGTTATTTGGTTCATTAT
TGTCTAATGTCTTGAGTCTTGCATACATATGTATATGTATATATACATAT
ACATATCCAAGTTTACAGTCATATTTCAATATCCTTGACTTACATGGATT
CAGTGTAGAATTTCATTAAAAGTCTGTAAACTAATCTGCAGCATGTTCCA
ACTATATTAACATGGGCAGATTTGTCCAATCATGTTTCTTGTTCCATAAC
CTATTAAAACATCCAGGAAATGGAAGCAGGCTAGATGTTCATCAACTTTT
ATTTTTTTTATGAATATGCCCCACACTTACACAATGGAATAATCAGTCAT
CTCTTAAAGAAAACACCCATTATAAAATGTCCAAGTAAATGGATAGATCT
ATAAAAATCTAAGTTAGGTAACTCAGATCCAGACAGATAAATGTTATTTT
TTCTCTCTTTATTTTAATGTTACCTTTGTCTGTTTTACTATATGTGAATA
CCTAAAATGGTTAGGAAATTTAGTAAGTGGCAATATTTTCACTAGACTAG
ATATACCGTATCTACCGTCCTGAATAGAACTAGTTGAATTCATTGTTATA
TATTATGGCTGATAAATGCAA
ATTCATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGCTAATACCATCTGCCTTATG
TTTTGTTGGTCTGTTTGTGTTTGTTTTTGTCTTTTGTCTGGTATTATTGT
TGGTTTGTTTGCTTGAAAGGCTCTTAATATCTACATTGATTTCATTAGTG
GTTATAGTTCGATTTAGATTGTTTATCTTATCTTGACTTAACTGTGATAA
GTAGTACCTATCAAGAAAATTATCCATCTCTTCCATGTTTTCCAATATTA
TAGATGATTTTTAAAATATTTTAGACCATTCTTATTCTCTGAATTTCTTT
GGTGTCTTTTGTTATTTTCCCCCCCCCCCATTTCTGATTTTGATATTATA
TCTCTGTATTTTAACCACCCCAAAATAAAAATATGTATATATTGGTGAGT
TTCTCAAACAACCATCTTTATGTGCCACTGACTCTTTTTGCATTGTCCTC
ATTTCTCTATTTTATTGATGTTAGCTGTCATTTTAATTATTTCTTGATTT
CTTCTCCTCTTATGCGTATTTTTTTTTTTTTCTTTCCTTAACACTTTCCT
GTTACCTTGTTTATCCCTTACCCTCACTCTATTCACCCATTTTTTTTTTT
TTTTATACTCTCCCTTTTTATTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_l18.b1 MSMg01no067_l18.b1 CHROMAT_FILE:
MSMg01no067_l18.b1 PHD_FILE: MSMg01no067_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:55 2005
         (314 letters)



>mm_chr4_78804149_78804862
          Length = 714

 Score =  571 bits (295), Expect = e-167
 Identities = 304/307 (99%), Gaps = 2/307 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgattatttctgtaccccattttaaattgggttatttggttcattattgtct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaattctctgattatttctgtaccccattttaaattgggttatttggttcattattgtct 452

                                                                       
Query: 65  aatgtcttgagtcttgcatacatatgtatatgtatatatacatatacatatccaagttta 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aatgtcttgagttttgcatacatatgtatatgtatatatacatatacatatccaagttta 392

                                                                       
Query: 125 cagtcatatttcaatatccttgacttacatggattcagtgtagaatttcattaaaagtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 cagtcatatttcaatatccttgacttacatggattcagtgtagaatttcattaaaagtct 332

                                                                       
Query: 185 gtaaactaatctgcagcatgttccaactatattaacatgggcagatttgtccaat-catg 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 331 gtaaactaatctgcagcatgttccaactatattaacatgggcagatttgtcc-atgcatg 273

                                                                       
Query: 244 tttcttgttccataacctattaaaacatccaggaaatggaagcaggctagatgttcatca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tttcttgttccataacctattaaaacatccaggaaatggaagcaggctagatgttcatca 213

                  
Query: 304 actttta 310
           |||||||
Sbjct: 212 actttta 206



 Score = 58.7 bits (30), Expect = 4e-13
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 86  atatgtatatgtatatatacatatacatat 115
           ||||||||||||||||||||||||||||||
Sbjct: 401 atatgtatatgtatatatacatatacatat 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)