Query= MSMg01no067_l24.b1 MSMg01no067_l24.b1 CHROMAT_FILE:
MSMg01no067_l24.b1 PHD_FILE: MSMg01no067_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:56 2005
(316 letters)
>mm_chr4_28458452_28459168
Length = 717
Score = 522 bits (270), Expect = e-152
Identities = 300/310 (96%), Gaps = 1/310 (0%)
Strand = Plus / Minus
Query: 5 gaattctctatcaataacatcatccacatc-tttataattgaggtgcaaagtcagtaatc 63
|||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||
Sbjct: 514 gaattctctatcaataacatcatccacatcttttacaatcgaggtgcaaagtcagtaatc 455
Query: 64 aactcgacaatttgacgagaacctaggtacatcacttcaaagaatttataatcctcctca 123
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 454 aactcgacaatttgaggagaacctaggtacatcacttcaaagaatttataatcttcctca 395
Query: 124 ttagaagcatcttatcaatcacaagactgttccatggctgtcattaaaccttcatggaaa 183
|||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 394 ttagaagcgtcttatcaattacaagactgttccatggctgtcattaaaccttaatggaaa 335
Query: 184 taactagaatacagtaagagaccaaatatgtatcccatgaggattgcatgcaggagctca 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 334 taactagaatacagtaagagaccaaatatgtatcccatgaggattgcatgcaggagttca 275
Query: 244 tcaactgttatgtaaacactagaaagctgtgtagtctcctatctatggcacaaagcctgg 303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 274 tcaactgttatgtaaacactagaaagctgtggagtctcctatctatggcacaaagcctgg 215
Query: 304 agctaattta 313
||||||||||
Sbjct: 214 agctaattta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 717
Length adjustment: 9
Effective length of query: 307
Effective length of database: 708
Effective search space: 217356
Effective search space used: 217356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no067_l24.g1 MSMg01no067_l24.g1 CHROMAT_FILE:
MSMg01no067_l24.g1 PHD_FILE: MSMg01no067_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:56 2005
(280 letters)
>mm_chr4_28318346_28319026
Length = 681
Score = 520 bits (269), Expect = e-152
Identities = 278/281 (98%), Gaps = 1/281 (0%)
Strand = Plus / Plus
Query: 1 acctccctattcc-aagaactctttttctttcttttttgccagttcagtccctgaagcaa 59
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctccctattccaaagaactttttttctttcttttttgccagttcagtccctgaagcaa 260
Query: 60 cgtccaaagataagagactcttttatcttgatcctaaaaactccctggattttattcagt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtccaaagataagagactcttttatcttgatcctaaaaactccctggattttattcagt 320
Query: 120 gtaatgatcctagaattcaaggattttagcttgtcattctttttcttcaggctgcccatt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaatgatcctagaattcaaggattttagcttgtcattctttttcttcaggctgcccatt 380
Query: 180 gatgttcagaacagctgccctttttctaagtccataaattcctcatgtaaatcatactgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgttcagaacagctgccctttttctaagtccataaattcctcatgtaaatcatactgt 440
Query: 240 tctcttatggtaacaactcagttcccaaaatccatccctgc 280
|||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 tctcttatgggaacaactcagttcccaaaatccatccctgc 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 681
Length adjustment: 9
Effective length of query: 271
Effective length of database: 672
Effective search space: 182112
Effective search space used: 182112
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
