BAC Information

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BAC

Clone NameMSMg01-067N18
Chromosome4 (Build37)
Map Location 71,346,905 - 71,347,027
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039565, LOC100039979, LOC667638
Downstream geneEG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067N18.T7 (MSMg01no067_n18.b1)MSMg01-067N18.TJ (MSMg01no067_n18.g1)
ACCAG292493AG292494
length628682
length of high quality
(start - end)
122 (66 - 187)286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no067_n18.b1 PHD_FILE: MSMg01no067_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:05 2005CHROMAT_FILE: MSMg01no067_n18.g1 PHD_FILE: MSMg01no067_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
TTCTATCTAAGACCGCTCACTAAAGAAAGGATTTTATCAAGAACTACATT
GGGGGCTTTCCTGCTCCCAAGCATAGTGGTAAATACTTGGTTTGAAAAGG
AGAGTTTTGCCTTAGCTGTGAACACAGCCCTTGCTCTCTATATCAGAAAG
GGCATCAGCAGCAAATTTATTGAAACCATGATGGCTATTAACACAGATGA
CCTATAAAACTGATATTTTCAGAAGGCCAGCTCCAAAAGTCAAATATTGA
AACCAATTCCGGCCCAAAAAAATTGGTCCTCTTAAAACAATTCTCTTTAA
CCTACATGGGAAAATAATTTAATCCCTTTTTTTTTTTTTCTTGTCTCCTC
CCCCACCCCCCCTTGGAAATATTTACATATTTTGTGAACCCCATTTATCT
TTATTTCATTTTTTCCTCTCTCCCGCATTAATATTAAAAAATATTTTTTA
TTATAACTGTGGCTTCGGCGGGTTTCTCTCCCTCTCTTTCTGATATTTCT
CATAATTTATCAACTAATTACCTACCCTTTTCCTTTTATTATTCTTCCCT
TCCATTATTCTCCCTATTCCCTCCCCTC
ACCGATGAAGTGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACGAAAAACAAATTCACACATTATC
TTTCCACGAATCTAGCCATTGGAAGGATAATAGTAGAAAAAAAAAAAACA
AAACAATACGAGGACAGAAACCACGTCCTAGAAAAATAAGAAAGTAATCC
TTCAACAAACCTATAAAAAGACAGCCACAAGAACAAAATGCCAACTCGAA
CAACAAAAATAATAGGAAGTAGCAATTACTTTTCCTTAATATCGTTTAAT
ATCAATGGATTCAAGTACCCAATTAAAAGACATAGACTAACAGACTGGCT
ACACAAACTTTTTTTTTCATCCCGCCCGCCCCCAGGGAACCCATCTCACG
GAAAAAGAGAGACACTATCTCAAAAAAAAAAAAAGGAAGACGGGGTTCGG
GAGCAAATGGTCTGAACAAATAAGTTGGAGTAGCCATTCTAATATTGAAT
AAAAATGACTTCCTACCCAAAGTTATCACAAAAGATCAGGAGGGGCACTT
CTTACCCATTAAAGGTAAAATCTTCCAGGAGGAACTCTCAATTCTGAATA
TCTATGCTCCCTATGGAAGGGCAGCCACCTTCCTTAAAGAAATTTTAAGA
ATCTCAAAGGACACACTGCACCTTCCCCGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_n18.b1 MSMg01no067_n18.b1 CHROMAT_FILE:
MSMg01no067_n18.b1 PHD_FILE: MSMg01no067_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:05 2005
         (122 letters)



>mm_chr4_71346705_71347227
          Length = 523

 Score =  199 bits (103), Expect = 4e-56
 Identities = 118/123 (95%), Gaps = 1/123 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcactaaagaaag-gattttatcaagaactacattgggggctttcctgctcccaagcat 59
           |||||||||||||| ||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 201 ctcactaaagaaagtgattttatcaagaactacattgggggctttcctgctattaagcat 260

                                                                       
Query: 60  agtggtaaatacttggtttgaaaaggagagttttgccttagctgtgaacacagcccttgc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 agtggtaaatacttggtttgaaaaggagagttttgccttagctgtgaacacagtccttgc 320

              
Query: 120 tct 122
           |||
Sbjct: 321 tct 323


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 523
Length adjustment: 8
Effective length of query: 114
Effective length of database: 515
Effective search space:    58710
Effective search space used:    58710
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)