BAC Information

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BAC

Clone NameMSMg01-067O19
Chromosome4 (Build37)
Map Location 30,019,158 - 30,019,470
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040907, LOC100040811
Downstream geneLOC665185, LOC619906, LOC100040864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067O19.T7 (MSMg01no067_o19.b1)MSMg01-067O19.TJ (MSMg01no067_o19.g1)
ACCAG292542AG292543
length693693
length of high quality
(start - end)
318 (44 - 361)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no067_o19.b1 PHD_FILE: MSMg01no067_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:10 2005CHROMAT_FILE: MSMg01no067_o19.g1 PHD_FILE: MSMg01no067_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACACAAACTGTTACATTCAATCCAGGCAACATCTTAGCACAAAGAAA
TAGAAATGGGCAGAGAGTTCCATCCCTGACCAAGATGCTATTTGAATGTG
ATAATATGTTGAAGAGGAGACAATATTCTCCATTGGAGTGATACTGGCTA
TACTAAACACACTCCATGCTATGCCTCATTCTCAGGATTTATTAGTGAAG
GAAGAGCAGGCTCCATTTTTATTTTGGTGTTCTTGTGTTATTGTGATTTT
TTTTTGTTTTTGTGACTTATTTTTTATTTTAATTTAAATAAATATATTTT
TAGAAACATAATGTATTATATGTTCCCCCCGCCACAGACAGGGGGAGTAT
TTGAAAGGAGTTAGGCAAGAGGAAAAAATATGAACAAAATATATTATACT
GTATGGAAATTTTAAATGAACAAATTTTAAAAATGAAAATGACAGATGTA
TAAGTCACAATGTACTAATCTAAGAAACATGAAAAATTAAGACAAAACAA
CTAATCAAATGATTACAGATCTTAAAGGAGTAATACCCAGGGACAGTGAA
TTAGAAATACAAGTCACACACCTCAAAAGAATGATTATAAGCCATCTATC
TATCTATCTAACTATCTATCTATCTATCTATCTATCTATCTAC
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTT
TAATGGGGTTATTTGATTTTCTGAACCCCACCTTCTTGAGTGAGTGAGGT
AACACATTCACAAAGAAACTCACACAATATGTACTCACTGATAAGTGGAT
ATTAGCCCCAAACCTAGATATAAGATATAATTTGCTAAACACATGAAACT
CAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTG
GGAACAAAACACCCATGGAAGGAGTTACTGAGACAAAGTTTGGAGCTGAG
ATGAAAGGATGGACCTTGTTTTTTACTGCCCCACCCCGCGATCCACCCCA
TAATCAGCATCCAAACGCTGACACCATTGCATACAATAAAAAGATTTTAT
TGAAGGGACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAG
CAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCATAGGGC
TCCCAATGGAGGAGCTGGAGAAAGTAGCCAAAGAGCTAAAGGGATCTGCA
ACCCTATAGGTGGAACAACATTATGAACTAACCATTACCCCGGAGCTCTT
GACTCTAGCTGCATATATATCATAAGATGGGCTAATCGGCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_o19.b1 MSMg01no067_o19.b1 CHROMAT_FILE:
MSMg01no067_o19.b1 PHD_FILE: MSMg01no067_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:10 2005
         (318 letters)



>mm_chr4_30018954_30019670
          Length = 717

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%), Gaps = 1/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacacaaactgttacattcaatccaggcaacatcttagcacaaagaaatagaaat 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacacaaactgttaaattcaatccaggcaacatcttagcacaaagaaatagaaat 264

                                                                       
Query: 65  gggcagagagttccatccctgaccaagatgctatttgaatgtgataatatgttgaagagg 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggcagagagttccatctctgaccaagatgctatttgaatgtgataatatgttgaagagg 324

                                                                       
Query: 125 agacaatattctccattggagtgatactggctatactaaacacactccatgctatgcctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agacaatattctccattggagtgatactggctatactaaacacactccatgctatgcctc 384

                                                                       
Query: 185 attctcaggatttattagtgaaggaagagcaggctccatttttattttggtgttcttgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attctcaggatttattagtgaaggaagagcaggctccatttttattttggtgttcttgtg 444

                                                                       
Query: 245 ttattgtgatttttttttgtttttgtgacttattttttattttaatttaaataaatatat 304
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttattgtgatttttttt-gtttttgtgacttattttttattttaatttaaataaatatat 503

                         
Query: 305 ttttagaaacataa 318
           ||| ||||||||||
Sbjct: 504 tttgagaaacataa 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space:   218772
Effective search space used:   218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)