BAC Information

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BAC

Clone NameMSMg01-067P08
Chromosome4 (Build37)
Map Location 87,649,898 - 87,796,603
singlet/doubletdoublet
Overlap geneMllt3, BC057079
Upstream geneSlc24a2
Downstream genePtplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067P08.T7 (MSMg01no067_p08.b1)MSMg01-067P08.TJ (MSMg01no067_p08.g1)
ACCAG292568AG292569
length703690
length of high quality
(start - end)
145 (162 - 306)241 (77 - 317)
definitionCHROMAT_FILE: MSMg01no067_p08.b1 PHD_FILE: MSMg01no067_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:13 2005CHROMAT_FILE: MSMg01no067_p08.g1 PHD_FILE: MSMg01no067_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,796,459 - 87,796,603)(87,649,898 - 87,650,138)
sequence
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAAGGGAAT
AACACAAGTTGCCATGACAGACTAAATATTTATAACCTAGATGATAGACA
GGATGAATACCCCCCCCAAAAAAGGAAAACATAATATAGACATGCAAATC
CCACTGAATAAGATTCATAACACCCAGGTGAGTGCATGGGGACACACTCT
CTCTCACTGAGCACACACCGCTTCAGCCTTTGTGGAAAGCCATTTTATAC
TATCTGTAAAACCTTTAAATGAAGAAATCTTCCTACAGTTAGGGCTTGCA
TATACTCTTTTAGGAAGATGCTGCGCTGTGCTGGCTATCTGGGAAAGATT
TTTTTTTATCACCCCCCCCCCCCCCCCAACGATATATCTTATGATAGAAT
GATATTACCCCCTACAGAAAAAAAGAAAAAACGACACGAAGGCTGCCGCT
TCTCCTCACCCATCCATTTTTTTATTTATTCTTTGTTTATCCGTCCTACC
CACCTACTACCACAATATTTCCTTTATTTCTCCCTCCTTCCCTTCTCCCC
TTATATTATATTTATAAATTTCTATCCTATATCTCCCCCTTTTATCAGCG
TTCTCTTTTTTATATTTTCCCCTTATTTTTTCCCTCCACACCCTTCCCAT
TTACTTTCTATTTTCCTTCCCTCTCCATTCTTCCTTCTCCCTCTTTCTCC
CTG
TATCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATTTCAGGGGAATGAATAATCA
AATCAGGTATCTGAAGGATGAGAGGATAGTTAAGTAAGGCAGGCATTTCT
ATACAGTATTAGAGGACAATTGATTCTGCCTCTCTCGTGTGAGGACTGTA
GTGTTGCTTTATAAAGCAAACCCAGTTCTTGAGGGATTTGTCCCTATGTA
CTATAAGGCTTTCAGGATAGTGAGTGGAATCACTGTTATATGACACACAT
GTGCATCAAACATGATTACTTGTTTATAAATGGGGGCCTTAAGGCATTCA
ATAATTCTTTTTTTTTATCGCCCCCCCCCACCCATATATATTCTCATATA
TATATTGATTGTAATTACACCCCCCATAATTAATCAAAAGTCTTATCAGG
TTTTTACCTATTTTCCCTTCCTGTATAATCATGCTTATCATTTATTTCCA
CCATATAGAGAATTCTTTGTTATATAGCCTTTTCTCTATCCCACTCTAGC
CATTCCTGGTCAACCATTAATCTCATGTATTTTATTTTTTTTTGTATTTC
TTGTTTAAGGCTTGATAAATTGAACCTTAAAATGCGAAGTAAGTTTGGTA
TTATAAGTAATAAATAACTGTGCCGTTTTTTGGTTTGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_p08.b1 MSMg01no067_p08.b1 CHROMAT_FILE:
MSMg01no067_p08.b1 PHD_FILE: MSMg01no067_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:13 2005
         (145 letters)



>mm_chr4_87796259_87796803
          Length = 545

 Score =  281 bits (145), Expect = 2e-80
 Identities = 145/145 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gattcataacacccaggtgagtgcatggggacacactctctctcactgagcacacaccgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gattcataacacccaggtgagtgcatggggacacactctctctcactgagcacacaccgc 286

                                                                       
Query: 61  ttcagcctttgtggaaagccattttatactatctgtaaaacctttaaatgaagaaatctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ttcagcctttgtggaaagccattttatactatctgtaaaacctttaaatgaagaaatctt 226

                                    
Query: 121 cctacagttagggcttgcatatact 145
           |||||||||||||||||||||||||
Sbjct: 225 cctacagttagggcttgcatatact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 545
Length adjustment: 8
Effective length of query: 137
Effective length of database: 537
Effective search space:    73569
Effective search space used:    73569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no067_p08.g1 MSMg01no067_p08.g1 CHROMAT_FILE:
MSMg01no067_p08.g1 PHD_FILE: MSMg01no067_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:13 2005
         (241 letters)



>mm_chr4_87649698_87650338
          Length = 641

 Score =  427 bits (221), Expect = e-124
 Identities = 236/241 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatttcaggggaatgaataatcaaatcaggtatctgaaggatgagaggatagttaagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatttcaggggaatgaataatcaaatcaggtatctgaaggatgagaggatagttaagta 260

                                                                       
Query: 61  aggcaggcatttctatacagtattagaggacaattgattctgcctctctcgtgtgaggac 120
           |||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct: 261 aggcaggcatttctatacagtattagaggacaatcgattctgcctctatcatgtgaggac 320

                                                                       
Query: 121 tgtagtgttgctttataaagcaaacccagttcttgagggatttgtccctatgtactataa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 tgtagtgttgctttataaagcaaacccagttcttgagggatttgtccctaagtactataa 380

                                                                       
Query: 181 ggctttcaggatagtgagtggaatcactgttatatgacacacatgtgcatcaaacatgat 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctttcaggatagtgagtggagtcactgttatatgacacacatgtgcatcaaacatgat 440

            
Query: 241 t 241
           |
Sbjct: 441 t 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)