BAC Information

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BAC

Clone NameMSMg01-068F20
Chromosome4 (Build37)
Map Location 52,738,695 - 52,738,993
singlet/doubletsinglet
Overlap geneLOC100040908
Upstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik
Downstream geneLOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068F20.T7 (MSMg01no068_f20.b1)MSMg01-068F20.TJ (MSMg01no068_f20.g1)
ACCAG292876AG292877
length724735
length of high quality
(start - end)
194 (129 - 322)301 (73 - 373)
definitionCHROMAT_FILE: MSMg01no068_f20.b1 PHD_FILE: MSMg01no068_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:47 2005CHROMAT_FILE: MSMg01no068_f20.g1 PHD_FILE: MSMg01no068_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCAAATTTGCGGCGCTACACGACTCCTATAGGTTTCGAACCGCGGAAT
CTCAATAGAGAATTTCAACTAGCTGAGAAACACTTAATGAAATGTTCAAC
ATCCTTAGCCATCAGGGAAATGCACATTGAAATTACTTTGAGATTCCATC
TTAAAGCTGTCAGAGTGGCTAAGGTCAAAAACGCAAATGACAGCTCATGC
TGGCAGGAATGTGCAGCAACAGGCACACAACTCCATTGTTGGAGGGAGTG
CAAATATATTCATTATGAAAATCAATATGGCAGTTACTCAGAAGTTGAGA
ATCAATCTACCTCAAGACCCAGTTAGATCCTTCCTGGGCATATACCCAAA
GGACTCTCTATCTTTTTTTTTTCTCCCCCCCCCCACCCCTATTACAGTTT
TTTCCATAACAGCAAGGACAGAATAACAATATAGAAGAAACTTCATCGGA
GGAGTGGATAAAGAAATTGTGGCACATTTACACAATGGAGCATGACTCAA
CTGTTAAAAAAAATGATATCATGAATCTACAGGCAAATGGCTTAAAAGTA
GAGAAAATCATCCTGGGTGAGCTAACCCATACCCAAAAAGATAAATATGG
ATTGTATTCCCTTATAAGGAAAATTATCCGTTTAGCCAATGATAACTAAG
CTACAGGCCAAAGACTCTTATATATTAGGTACAGAAAAAGGGTCCTAGAG
AGCCTAAATGCACTTCCTGGCATG
TCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCGCCATTCACTCTTGTAACCATCAGAGGGAAGTAG
GCGGGAGCCATGTGCAACCGAAGAGCACCAAGTGAGCCCCAATCAGCTGT
ATCTAAAGGCCTCACGAATGGGGTGTGGCTGTGCTGGATCATCGATGTCT
GAAGGCCTCACAAACAGAGCATGGCCATTTCTGTGTTCTATTATGTGGTC
GGCTATCAGATCTAGATGACTCAAAAATTGGAGAAAGAAATAGGTTAGGT
TAAATCCCAAGGAAACCATTGGGTCTTTAAAATTATATCTTTCTCTTTGA
AAAACTACATAAGGCTATTTTCTTTTAAGCCACACTCCCACTTTGCATAT
GTTCCTCCATACCCAACTACCCAACTTGGCAAATATACATTTCCAGAATG
CAAACACTTTTAGCATCTTTCTTTGCAATAATGATTTGAGCTACCCCTTG
TCACTATCTTTCTGTCATTTAAAGAGTATTTGAGATGCAATACACACACA
CACACACACTCTGAGAGACACTCACTCACACGTGCATACATACTGTGATG
TGGGGGGGGTGAAGACATTTTTCTCAATTTTCACTTTTTTTAACTCGACC
TCTACATTTTTACATCCTTCCTTTCTTTCATTTTATCCCCTATTATCTTC
TTATTTTTACTAACCTCTATTCTTTCTTTCTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_f20.g1 MSMg01no068_f20.g1 CHROMAT_FILE:
MSMg01no068_f20.g1 PHD_FILE: MSMg01no068_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:47 2005
         (301 letters)



>mm_chr4_52738495_52739194
          Length = 700

 Score =  495 bits (256), Expect = e-144
 Identities = 289/302 (95%), Gaps = 5/302 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactcttgtaaccatcagagggaagtaggcgggagccatgtgcaaccgaagagcacc--a 58
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||   |  |
Sbjct: 499 cactcttgtaaccatcagagggaagtaggcgggagccatgtgcaaccaaagag---cgga 443

                                                                       
Query: 59  agtgagccccaatcagctgtatctaaaggcctcacgaatggggtgtggctgtgctggatc 118
           |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 442 agtgagccccgatcagctgtatctaaaggcctcacaaatggggtgtggctgtgctggacc 383

                                                                       
Query: 119 atcgatgtctgaaggcctcacaaacagagcatggccatttctgtgttctattatgtggtc 178
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 382 atcgatgtctgaaggcctcacaaacagagcatggccatctctgtgttctattatgtggtc 323

                                                                       
Query: 179 ggctatcagatctagatgactcaaaaattggagaaagaaataggttaggttaaatcccaa 238
           | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 322 gactatcagatctagatgactcgaaaattggagaaagaaataggttaggttaaatcccaa 263

                                                                       
Query: 239 ggaaaccattgggtctttaaaattatatctttctctttgaaaaactacataaggctattt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 262 ggaaaccattgggtctttaaaattatatctttctctttgaaaaactacacaaggctattt 203

             
Query: 299 tc 300
           ||
Sbjct: 202 tc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 700
Length adjustment: 9
Effective length of query: 292
Effective length of database: 691
Effective search space:   201772
Effective search space used:   201772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)