BAC Information

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BAC

Clone NameMSMg01-068K20
Chromosome4 (Build37)
Map Location 90,896,889 - 90,897,487
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC619842, LOC435792, Ppia-ps4_804.1, LOC664840, LOC664848, LOC100042274
Downstream geneElavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068K20.T7 (MSMg01no068_k20.b1)MSMg01-068K20.TJ (MSMg01no068_k20.g1)
ACCAG293115AG293116
length1,625712
length of high quality
(start - end)
---599 (75 - 673)
definitionCHROMAT_FILE: MSMg01no068_k20.b1 PHD_FILE: MSMg01no068_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:11 2005CHROMAT_FILE: MSMg01no068_k20.g1 PHD_FILE: MSMg01no068_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCCCCCTCCCCCTCCNCTTTTTTTTTNTNCCCCCTCTCTTCTTTCTTT
CTTCTCTTACTTCCTATTCCTCCTCTACATCTAATCATCCCTCCACCCTC
ATAANAATATTATTAGAGTCGCCCNTATATACGAAATTACACTCAACTAT
TTTTACGAAGAACACACACGTAGATNTAATATTCCATTGCCCGAACATAT
TCTCTCCCCAGAAATTATGATAATATTCCCTAACTTATTACATCAAGATA
TATTACCACATTATAATGNCTACGATATCAGCTGTCTGCACGATACTAGA
TATCACTCGCTCTTGGTGCGATACTCGCACATTAGCACATCTGCGCGGGT
ATATACGAGTCGAGACAAGGACGCAGTGATCGGTGTGGAGGTATATATCA
ACAGGTGAGAACGCGTTACGAATGGACGTGGGCGAAACATCAACGGGGAC
TATTGCTATACGAAGATGCATATAAGTATACTTAGCGCGGATACGAGCCG
ATCTGTTAGAACTACATCTAGCGGCAAGGCCGCAGAAGCACATGAGGTGG
GAGCGCTCGACTCCGACTTGTACTGTGTGCGCGTGCGACGGACGACGGCG
GCAATCTGTGTATACAATGGGTTCGTAAATGTGCCACAAAACCCACGATG
AATATCGATGAGTGAACACACTATGCAGACCTGGGTCTGTGGCATGAGAC
TCTTGGTGATCTATGCGAGTTGTAATTATGGTGGTATACGGCATTATATG
TATGATGTCGAGACGAATACACCTTCCTATCGTATATGCGCTCGCTGTGA
GAAATAAATATGCGTCGCGTAAATGAGAATATATTATCGCGCGGATAGAC
GCATGAAGATGCGCGCGTCGGACGATCAACATGTACACGGCGCCTTCGCA
TGTTCGCGTGATTATGCGACANTTGAGGCGCGTCGCGCGTCGAGGGTAAC
ATGAGCTGTGAGGGNGCAGGACGCTATAGTACGTGAGATTTATATCTCGC
ATACTGCAATAGACGTGTGTCGCGTGATAATACGCGCTCGACTGAGTCGC
GATTATTATTCCACGTCGTCGTGTNATTCATAAGCGCCGGACGATAACAC
CGCATGAAACATCGTGTGTATATACACNACGTATACGCGTACGCACCAGC
GGCACGCGGCGATGATCGATACTAATCGCTCTCACTTGGGTTTCTCGTAA
GTTGTATGCGGGTCGCCACGCAGACGCGCAATAGATTAGCCGAAGACGAA
TACTAGCGTGTATCGATCGCATCGTAGTACACGATAAGTCCACGACCCGA
CGATCGGCTCAGCAGCTGTATATATCGTNGCGTCGCGACCAGTATAGTGT
AGAGTATATACACTGATCTACGCGGATGTAACTACTACAGGCGAACACTG
TAATAGACATGGGATCACNGTGTCACTATTATGTCTGATCACGTGAGCTA
ANGCTGTATCTATAACATTCACGACTACACCGCGGAGGATAAACGTTGCT
GTGCGATACATATAACATGACGCGTCGTACGTATATATATCTCGCGCGTC
TCAACAGAGAGAGGGCGACTATAATATATCTATAGTTCGCCGTATTGCGA
CCGCGTTATAATCTTTGTAGCTTGN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTATCTAAAAGCGTTTAACATTTT
GTAGGGCAGGCATTCTGCAGAAAGAACCATTGGATCCTCGGGAGGAGGTT
TTCAAATTCTACCCTCCTGATACAAAGATATGCCTGCATAATGCACTGTA
AGGTACATCATACGTCACAGGGAAAAGGGGGGACACTTACCATGGCCCCA
CATGCTCTCTGGCACCATCACTCCTCCCATCTCCTGGCTGGCTGGATTCT
TGAGTAGTTCTGGTGAGGGCCTTTCCTCCAAGCACAGAGTGATTTGAGGA
AAGCATGAATGAATAAAAACAGAGGGGCTGGCGAGAAGTGTGATTGCCAC
ATCTGTTAGGGGTGCATTTGGTAAGCCTTCCCCTGTCATGATATATATTC
AGAACTAATGACAAAGAGATGTAGTGCCTCCAGGCAAATGAAATGGAGGT
GCAAATTAGAATCACACCTGCAGCCTCATTTTGGTATCACTTCTTGTCTG
CATAAACAACACTTACTCTCACTCTCCTGCTCATGGCAAGTAGCCACTGT
TAACACTTGCACTAGGGATCAGTCACAACAAATTACAGTTAAGTTTCACA
CAGCACTGCAGGAGGCAGCCAGCCCCAGGGGAGCAGGGAGTTAAGCTGGG
CTTGCTTACCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_k20.g1 MSMg01no068_k20.g1 CHROMAT_FILE:
MSMg01no068_k20.g1 PHD_FILE: MSMg01no068_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:11 2005
         (599 letters)



>mm_chr4_90896689_90897687
          Length = 999

 Score = 1151 bits (595), Expect = 0.0
 Identities = 598/599 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttatctaaaagcgtttaacattttgtagggcaggcattctgcagaaagaaccattgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttatctaaaagcgtttaacattttgtagggcaggcattctgcagaaagaaccattgga 260

                                                                       
Query: 61  tcctcgggaggaggttttcaaattctaccctcctgatacaaagatatgcctgcataatgc 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tcctcgggaggaggttttcaaattctaccctcctgatacaaaaatatgcctgcataatgc 320

                                                                       
Query: 121 actgtaaggtacatcatacgtcacagggaaaaggggggacacttaccatggccccacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgtaaggtacatcatacgtcacagggaaaaggggggacacttaccatggccccacatg 380

                                                                       
Query: 181 ctctctggcaccatcactcctcccatctcctggctggctggattcttgagtagttctggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctctggcaccatcactcctcccatctcctggctggctggattcttgagtagttctggt 440

                                                                       
Query: 241 gagggcctttcctccaagcacagagtgatttgaggaaagcatgaatgaataaaaacagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagggcctttcctccaagcacagagtgatttgaggaaagcatgaatgaataaaaacagag 500

                                                                       
Query: 301 gggctggcgagaagtgtgattgccacatctgttaggggtgcatttggtaagccttcccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggctggcgagaagtgtgattgccacatctgttaggggtgcatttggtaagccttcccct 560

                                                                       
Query: 361 gtcatgatatatattcagaactaatgacaaagagatgtagtgcctccaggcaaatgaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcatgatatatattcagaactaatgacaaagagatgtagtgcctccaggcaaatgaaat 620

                                                                       
Query: 421 ggaggtgcaaattagaatcacacctgcagcctcattttggtatcacttcttgtctgcata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaggtgcaaattagaatcacacctgcagcctcattttggtatcacttcttgtctgcata 680

                                                                       
Query: 481 aacaacacttactctcactctcctgctcatggcaagtagccactgttaacacttgcacta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacaacacttactctcactctcctgctcatggcaagtagccactgttaacacttgcacta 740

                                                                      
Query: 541 gggatcagtcacaacaaattacagttaagtttcacacagcactgcaggaggcagccagc 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gggatcagtcacaacaaattacagttaagtttcacacagcactgcaggaggcagccagc 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)