BAC Information

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BAC

Clone NameMSMg01-068N13
Chromosome4 (Build37)
Map Location 123,092,729 - 123,093,191
singlet/doubletsinglet
Overlap geneMacf1
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, D830031N03Rik
Downstream geneLOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068N13.T7 (MSMg01no068_n13.b1)MSMg01-068N13.TJ (MSMg01no068_n13.g1)
ACCAG293245AG293246
length714721
length of high quality
(start - end)
452 (35 - 486)261 (61 - 321)
definitionCHROMAT_FILE: MSMg01no068_n13.b1 PHD_FILE: MSMg01no068_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:25 2005CHROMAT_FILE: MSMg01no068_n13.g1 PHD_FILE: MSMg01no068_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCGCTATACGACTCCTATAGTTCGAGAATGCGCGGAATTCTTTGAGCT
CTATCCTCAACTAACTGAAAGCTAATTTGAAATGTAGCTTGAACACATCC
ATTTTGTGGTTTCAGGGTGGAGACGGCATCAGAAGAGGTTCTCTGAAGCT
CCCTTGTGTTTCTCACTTAAAAAGTTTAGTGGGGCATGTGAGATGTACAG
ATGCTTTTTTTTTTGTTTTTGTTTTAGTTATCAGGGCAGCAAGAGAAAAC
CAAATCAGGTATTTACATCAGTCACTAAGATGGCTACTGGCAGAATTCCA
AAACTAAAACTAAATAGAAACTCATGGACAGACATAAAGAAAAGAGACCT
TGTGCTTTCTCTCCTTGCTTAGATTCAACACACACACCAATGATAAAAAT
GAATAAAACTTTTGGGCGGTGGTGGCACTCGCCTTTAATCCCAGCGCTTG
GGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAG
AGTGAGTTCCAGGACCGTCAGGACTACACAGATAATCCCTGTCTCAAATA
AACTAAAGATAAAAATAAAAAGAATTCTGTAGCTTAAAGAAATCTGTAGC
GGGAATTATGATTTCTTTAAGAAATCCAGAAATATTATTGAGAATAGTTT
TCATTTAATTCCCTTGTGTGGTGTATGGGGCCTGCTTTAGATGGTCCCCA
GCATCTGACTTTTT
ATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCGCCCAATTCATTCATTGCCCTAGTTTCATTTCCTCTTT
TTTTTATATTTACTTATTTCATATGCATAAGTGTTTTTGCCTACCTGTAT
GTTTGGTAACTAGAGAGGTTGGAAGAAGGTATGGGGTCTCCTGAAACTGG
AGTTACAGATAGTTGTGAGCTGCCATGTGAATGCTGGGAATTGAACCTGT
CTCTTGGAAGAGTAGCAAGTGCCTTTAAAATAAAATAAAATAAAATAAAA
TAAAATAAAATAAAATAAAATATTTTTAAAATAAAATAATAAAAAAAACA
AATAACACTTTATTCTGTCATTTTCTTTACAACTGAAACTCTGGGAATTC
AAAATTAACATCCTTGCCTGTGAGCTTCTTGTACACAGCAGAAAAAGTTT
GGACCTTGTGCTCCACGTTGTTCTGCTGTGCTTTGCCTAACTGAACATTT
ATGAGCCGGCTGCCATCCAGTTTCACATGGATCCTCTTACCCACAACTTT
GCTTGGGAAGACCGAGCCTTTCTGGATGGTACCATGCACTGCTGTCAGGG
TGCGGCTTCTGGGGTGCTTTTACTTATTTTTTGTACGGCTTTTCCCAGTT
GTCTTGGCTAGAGCCCTCCTCTGGAGTATGAGGATTCTATTTTTCTCCAT
GAACTTTTCTCTCCCATTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_n13.b1 MSMg01no068_n13.b1 CHROMAT_FILE:
MSMg01no068_n13.b1 PHD_FILE: MSMg01no068_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:25 2005
         (452 letters)



>mm_chr4_123092443_123093293
          Length = 851

 Score =  799 bits (413), Expect = 0.0
 Identities = 445/463 (96%), Gaps = 12/463 (2%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggaattctttgagctctatcctcaactaactgaaagctaatttgaaatgtagcttgaaca 61
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ggaattctttgagctctataatcaactaactgaaagctaatttgaaatgtagcttgaaca 690

                                                                       
Query: 62  catccattttgtggtttcagggtggagacggcatcagaagaggttctctgaagctccctt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 catccattttgtggtttcagggtggagacggcatcagaagaggttctctgaagctccctt 630

                                                                       
Query: 122 gtgtttctcacttaaaaagtttagtggggcatgtgagatgtacagatgcttttttttttg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 629 gtgtttctcacttaaaaagtttagtggggcatgtgagatgtacagatgcttttttttttt 570

                                                                       
Query: 182 t------------ttttgttttagttatcagggcagcaagagaaaaccaaatcaggtatt 229
           |            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttttttttttttgttttgttttagttatcagggcagcaagagaaaaccaaatcaggtatt 510

                                                                       
Query: 230 tacatcagtcactaagatggctactggcagaattccaaaactaaaactaaatagaaactc 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 509 tacatcagtcactaagatggctactggcagaattccaaaactaaaactaaagagaaactc 450

                                                                       
Query: 290 atggacagacataaagaaaagagaccttgtgctttctctccttgcttagattcaacacac 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atggacagacataaagaaaagagaccttgtgctttctctccttgcttagattcaacacac 390

                                                                       
Query: 350 acaccaatgataaaaatgaataaaacttttgggcggtggtggcactcgcctttaatccca 409
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 389 acaccaatgataaaaatgaataaaacttttgggcggtggtggcacttgcctttaatccca 330

                                                      
Query: 410 gcgcttgggaggcagaggcaggcggatttctgagtttgaggcc 452
           ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 329 gcgcttgggaggcagaggcaggcagatttctgagtttgaggcc 287


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 851
Length adjustment: 10
Effective length of query: 442
Effective length of database: 841
Effective search space:   371722
Effective search space used:   371722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)