BAC Information

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BAC

Clone NameMSMg01-068P12
Chromosome4 (Build37)
Map Location 119,621,996 - 119,622,212
singlet/doubletsinglet
Overlap geneHivep3
Upstream geneLao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
Downstream geneEdn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068P12.T7 (MSMg01no068_p12.b1)MSMg01-068P12.TJ (MSMg01no068_p12.g1)
ACCAG293339AG293340
length741745
length of high quality
(start - end)
237 (130 - 366)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no068_p12.b1 PHD_FILE: MSMg01no068_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:35 2005CHROMAT_FILE: MSMg01no068_p12.g1 PHD_FILE: MSMg01no068_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTTCACTGCCAAGTCTCTTGAGAGCTCCCCAGATCCTGCACGAGT
CAAAGAAAGATGAAAGGCCAAGGCTCCGTGGCTTAGATCCCTGGGCACCC
CAAGGTCGGCTTGCTTGACAAAGAACAACTCATTTGATGTGTGGTTCTCA
AGGTCATGGGCACTTGGCACCCATGCGAAGCCAGCACCTGTCATGTGCCA
CTCAAGACCTGAGATATGGTGGTGAAGACAGAGTCAGTGAGAGTCTGAAA
GAGTCCCTGGGGGATGCCCCTTCCTCCACCCCCCTCACTTGCTACTAAGC
AGGGACAGGTGTGATTTATTATTTCCTGACACCCCCCCCTCTGGCCTCTG
TCTGGACCTCTCAACACACCGCCGCCTGTGAAACAAAAGAAATCATCCCC
ACTCGAGGCTGAGGGCCCTGAGGTCAAGGATAGCAGGTGGACTCCTCCCA
CTGTTCCCAGTGTTCTTCATGGTGCCTTCCCCATATCAAGATGTAAATCT
ACCTTTCAGAATGAACATTGAAAACACCTTTCCATCCCAAACACTCAGCC
TTTTGTGACCCTTTCAGGGATCCATTCAGTCATCCTTGTCTCTGTTTCTC
TTTTGTGACCTCTGGTACAACTAAATTTTACTTCACTACCTGAATTTCGT
CCCGGATGGGTGAAGTTTCGCATCCTTATTTCCTGGCCTTA
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAATCCTCTGGCTAGCTATTCCGAAAT
GCACATTACATACTCTTGACTGGACTCACCCTGCCATATGACAGAGTCCC
ATATGACAGGAGTTCTTCTGTGATCTGGTCCCACTGATCACGTCCCTCCC
CTGACTGCTGACTCTCTGGTAACTCCCATGCTTCTCCCCACTTCTGTGAG
ATGAGCTGCTGAGATTCAACACTTCAGTAGAAGCTCTCAGTGATAGGTGG
CACACACGCGTGGGGGTGGCTTGTGACTGTTCATGCACTCGTCTCATTAT
TTTCACAGAATTTTTTTTTTACCCGCCGCCCACTCACCTTCTTGTTCTGA
CACTGATCAGGCACGCCCACTTGTTTGAAAATGAATGATTAGATGAAGAG
AGGTAATATGTCTTACTATCGTTCTGTTTGTACCTGTCTCTCTTCTTCGT
ATCCCTTGTTCTCCATATTCTAGGGGTTATTTTTTCTTTTTTATGCCCTC
TAATTTTTTTTTCTTTTCTTTCTACTGCTGTGCTGCTTACTTCTCCTCTT
TATTGTTTTTCGTTCTTTTTTCTGATTTTATCCGTGTTTTTTTTCTTCTT
CCTTTTTGCGCCTCCTCTTTCTCGTCGTTTCTTCTTTCGAGGTTTCTCCG
TCTTTCCTTTTTCTTTTGCCTTCTCTATTTTTTTTCTCGCTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_p12.b1 MSMg01no068_p12.b1 CHROMAT_FILE:
MSMg01no068_p12.b1 PHD_FILE: MSMg01no068_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:35 2005
         (237 letters)



>mm_chr4_119621778_119622414
          Length = 637

 Score =  366 bits (189), Expect = e-106
 Identities = 215/235 (91%), Gaps = 18/235 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcttagatccctgggcaccccaaggtcggcttgcttgacaaagaacaactcatttgatg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 219 ggcttagatccctgggcaccccaaggtcggcttgcttgacaaagaacaactca------- 271

                                                                       
Query: 61  tgtggttctcaaggtcatgggcacttggcacccatgcgaagccagcacctgtcatgtgcc 120
                      |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 272 -----------aggtcatgggcacttggcacccatgcgaagccagcacctgtcgtgtgcc 320

                                                                       
Query: 121 actcaagacctgagatatggtggtgaagacagagtcagtgagagtctgaaagagtccctg 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actcaagacctgagatctggtggtgaagacagagtcagtgagagtctgaaagagtccctg 380

                                                                  
Query: 181 ggggatgccccttcctccacccccctcacttgctactaagcagggacaggtgtga 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggatgccccttcctccacccccctcacttgctactaagcagggacaggtgtga 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)