Query= MSMg01no068_p17.b1 MSMg01no068_p17.b1 CHROMAT_FILE:
MSMg01no068_p17.b1 PHD_FILE: MSMg01no068_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:36 2005
(341 letters)
>mm_chr4_44211854_44212594
Length = 741
Score = 615 bits (318), Expect = e-180
Identities = 336/342 (98%), Gaps = 2/342 (0%)
Strand = Plus / Minus
Query: 1 ggagaacttcattagctgagtgacctgtgtcgttgtaaacgttctctaaagttttaagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ggagaacttcattagctgagtgacctgtgtcgttgtaaacgttctctaaagttttaagcc 677
Query: 61 atgtgtagttgcagcagcagcagcaggtacagccattcctctgttttgccttttcctcct 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 atttgtagttgcagcagcagcagcaggtacagccattcctctgttttgccttttcctcct 617
Query: 121 cttccacattacttaaaaatatatactatttcattattttatgtgtagtgttttgcctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cttccacattacttaaaaatatatactatttcattattttatgtgtagtgttttgcctgc 557
Query: 181 acatatgcctatgcatactaaatattcatattcttggcatattaatgctaaagtt-atca 239
||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||
Sbjct: 556 acatatgcctatgcatactaaatattcatattcttggcatattaaagctaaa-ttcatca 498
Query: 240 aagaaaatttttagtaacataaagtactcattcaaactacctacacacagagggaatgtt 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aagaaaatttttagtaacgtaaagtactcattcaaactacctacacacagagggaatgtt 438
Query: 300 ctttggactgttgagtgtttgctagtgtgcctgaccagaagc 341
||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 437 ctttggactgttgagtgtttgctggtgtgcctgaccagaagc 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no068_p17.g1 MSMg01no068_p17.g1 CHROMAT_FILE:
MSMg01no068_p17.g1 PHD_FILE: MSMg01no068_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:36 2005
(579 letters)
>mm_chr4_44118768_44119746
Length = 979
Score = 1071 bits (554), Expect = 0.0
Identities = 572/578 (98%)
Strand = Plus / Plus
Query: 1 acagccaggacccaaacaaagacaaaaaagccaaaggaacaaaagcaggtataggcaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagccaggacccaaacaaagacaaaaaagccaaaggaacaaaagcaggtataggcaagt 260
Query: 61 gcctgttagaggcacctgcaactttgccacagctcagtcttttgcatcctctctgtgtgt 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 gcctgttagaggcacctgcaactttgccacagctcagtctttcgcatcctctctgtgtgt 320
Query: 121 tccataacctcaaaatatctccgacactcatttctttagaacctgctgttagacctattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccataacctcaaaatatctccgacactcatttctttagaacctgctgttagacctattg 380
Query: 181 ctagctcttgtctttgaatgcactagtgaatcgctatttcttctccacaccacagatatt 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagctcttgcctttgaatgcactagtgaatcgctatttcttctccacaccacagatatt 440
Query: 241 tatatttggataacagtgtttcagcatcgttggccttctccctcctgcttactcgatgcc 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatatttggataacagtgtttcaacatcgttggccttctccctcctgcttactcgatgcc 500
Query: 301 tcaaaagcccgtggaaggacggagttcgcggcaggcggagggttaagagccgagccagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaaaagcccgtggaaggacggagttcgcggcaggcggagggttaagagccgagccagca 560
Query: 361 gctgcttaaggggagggtctgaaaacaggagatctgaagttccagttccacatccttctt 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 gctgcttaaggggagggtctgaaaacaggagatctgaagttccggttccacatccttctt 620
Query: 421 agaggacacaaagccttttgtttctcatctctattgccctcaagatttgatcaagagcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaggacacaaagccttttgtttctcatctctattgccctcaagatttgatcaagagcca 680
Query: 481 acagagagtaggctgaagctgaggagagaggaatgcctacgagcggtgctgttgctgccc 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 acagagagtaggctgaagctgaggagagaggaatgcctaagagcggtgctgttgctgccc 740
Query: 541 cagcccccaacatacaaggcatgtgcgccatcctctgc 578
||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 cagcccccaacatacaacgcatgtgcgccatcctctgc 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
