BAC Information

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BAC

Clone NameMSMg01-069A16
Chromosome4 (Build37)
Map Location 17,820,036 - 17,820,225
singlet/doubletsinglet
Overlap geneMmp16
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069A16.T7 (MSMg01no069_a16.b1)MSMg01-069A16.TJ (MSMg01no069_a16.g1)
ACCAG293394AG293395
length693696
length of high quality
(start - end)
190 (121 - 310)34 (64 - 97)
definitionCHROMAT_FILE: MSMg01no069_a16.b1 PHD_FILE: MSMg01no069_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:40 2005CHROMAT_FILE: MSMg01no069_a16.g1 PHD_FILE: MSMg01no069_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGATCCGCGGAATT
CAAATAGTTACCGAAGAAGGGAAGTAGTTTTCATACCAGCCTAGGAACTA
TCCATTCATAAGAATGCCTACAAACATGGGCATGCAGACTTAGCGATCTT
ATTTAGTATCTGAAAACCAAATCAAAGCAAACATCATTCTGAGTGTGCAT
GAACCCTATGGGTACAAGTCATATTGTAGGTGAGCACTAAGCTAATCAGA
GCCATTTCTTTGTCAGTAATATTACATGCAATGTAACAGACTACCATTCC
TTTCCTGAAAGAATTTATAGAGCCCAACTATAAATCCTATTTCTCTGCAA
GGTTTTTGTGTACATCATCACCTTTACGGGATATAAAGGTGCTTATATAT
TTTATTTTAAATTCTGGATCAATATTAATATTCATATTAACAATGTACAT
GTGTATATTATAATATCAGCTCTCATTGACGAGGAATAGAATAGGATATG
TTTGCTCTTACATTTTTATATCTCTCTCTCATTAACATCCGTGACTCTTT
CTTTTCTACTCTTTTATAAACGATTTCACTTCATTTGTATTTTATCAATG
TCGGTATTTTGCCCGCTTGCTGAATTTGCTTGAATGCATGAGATTCCCCG
AAGGAGTTACAATCTTCCGTTATCTGCCCTGTACACGCTTGAT
CTGTCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCAAATTCAGGGAACAAGTTATATGCAAAAATACATTTCAGTAAATTA
CCCTTTATTGCATGCCATGATGATACCAGGCATTTATATTTATGTTGATT
TTTATGACTGGCTTAATTATGCCAAATATCATTTCAATTTATTCAATCTA
CCTCATTAATAGGATATTAACAAACTATTATCGCTTCCCTCTATCTTTCC
CAAGCTTTTTTGTGTACAAATTACTGTTCATTGCTTACCGTGTCACTTTT
TTTTAAGCCACATACTTTGCTGATGATTATAGTTATATTTTTTTTTTTTC
CCCCGCCCCCCCCATGATAACTTTTGTCGATAATTCTCTGCTGTTCTATT
CAGAAAAAAAAAACAAGTTTTGTGGGGGGGGTTTACATACCCATCCACTT
CCCCTGCCCATTAACATTCAATTTATACTTTCTTCTTTACATAGACTATA
CTATATTTTAACTATTATCCTTCCTCTTATCCGTATCCTTTTCCCATCCA
TCCTTTTTTTATGCTTTATCATTTTCACTTCTCACTTCCTTCGATCCTCT
CTAATTTTTATTTTTTGTTGTCTCCATATTTTTTATCGCCCTTTTCCCTT
CTACATGAAATTCTTGCTAATCTAACCATTTATATTTTACCATACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_a16.b1 MSMg01no069_a16.b1 CHROMAT_FILE:
MSMg01no069_a16.b1 PHD_FILE: MSMg01no069_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:40 2005
         (190 letters)



>mm_chr4_17819836_17820425
          Length = 590

 Score =  321 bits (166), Expect = 2e-92
 Identities = 184/190 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaacatgggcatgcagacttagcgatcttatttagtatctgaaaaccaaatcaaagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaacatgggcatgcagacttagcgatcttatttagtatctgaaaaccaaatcaaagcaa 260

                                                                       
Query: 61  acatcattctgagtgtgcatgaaccctatgggtacaagtcatattgtaggtgagcactaa 120
           |||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 261 acatcattctgagtgtacatgaaccctatgggtacaagttgtattgtaggtgagcactaa 320

                                                                       
Query: 121 gctaatcagagccatttctttgtcagtaatattacatgcaatgtaacagactaccattcc 180
           | ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 gttaaccagagccatttctttgtcagtaatattacatgcaatgtaacagactacaattcc 380

                     
Query: 181 tttcctgaaa 190
           ||||||||||
Sbjct: 381 tttcctgaaa 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)