BAC Information

Click to search

BAC

Clone NameMSMg01-069E04
Chromosome4 (Build37)
Map Location 75,705,117 - 75,705,427
singlet/doubletsinglet
Overlap genePtprd
Upstream geneLOC636847, 3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069E04.T7 (MSMg01no069_e04.b1)MSMg01-069E04.TJ (MSMg01no069_e04.g1)
ACCAG293559AG293560
length686704
length of high quality
(start - end)
313 (43 - 355)97 (112 - 208)
definitionCHROMAT_FILE: MSMg01no069_e04.b1 PHD_FILE: MSMg01no069_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:58 2005CHROMAT_FILE: MSMg01no069_e04.g1 PHD_FILE: MSMg01no069_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAGATCCGCGGA
ATTCATTCTCTATTCCTTTTTCTTTTCTTGTTAAAAATCCTTAAACATTC
AGTTGTATTTGCTAAACCACCCAGATAAATATAGGGAAACATTTTAGCAC
AGGTACACATTAGATTTGTGAAATCTAAACATCTAAAAACCAAATTAAAG
CTGACATAGAATGGGTTGTTTAGGTTGCACTAATAGCTCGCTATCATGAA
AACTGGTCATCACAGGACACTGCACAAGATGGAAACTGAGAGAGTGGATG
TTTACAGTAAAAGACCATACCACTAGCTCAGTCACCTCAACTTGTTTAAG
GCATGACATTTTTATGTTTCCCACTACTAGTTACTGGGTTGTCTTCAAAT
GTATAAAGTCTACCACACAATCACAGAAAAATAATCTATTCTAAGTCAAG
GTAGAATAACTTGTCCTCTAAGCCTTAATTACAATATAGAGCAGACCTAC
CTTTTATAATGAAGAACATTTCTCACACCATTGATGATTTTCACCTTTGC
CTGGACCGGATCTACCACCCATACCCAGCCTTCCTCTTCTGCTGTGCATG
ATTGAGTATCCAGATCCATTGTACCATCTAGGTCTGAGTATTGCTTGGTT
GTATACATCCCCTGATTATACCTATACCCCATTTTA
GCCTGGCGGCGCCTGGCTCCAAATAAAGGTGACCTATAGAAGGTTCGCGA
AATACTTTCCCAAATGACTTTTGCAATTGCCGTTCTTAGTAATTTATTAT
CCCTCGAGTTCATTCCATGATGCACTTATGATTTATGAACTGTTAGCTTA
TTCGGTTTTATACCAGATGGAAGCATGGACTTTTATTCAGAGGCACCAGG
TGAAAATAAACAGTAGGCACTCAAATAATTTTCGGAAAAGTTATATACAA
TCACGGAAGGATGCGTCCCGAGAACATTTGAAGAAGCGGTAACTACCGTG
TTTTTTTTTATCTAGAGCACTACAAATAGAACAAGAAATGTTTGATAGTT
TCCCGGAGCGGGCCCCCCAAAAGATTTAAGAGAAGCTGGGCCCGAGCGCG
CCCAAAGAACGTATTCTTAAAATGGGTGGGGGGCGGGGGGCGCGGTTCGC
ATTTCCTATCCCCTTCAACTCTACTGGTTTATCCTTATATTTTGCATTAT
CCCTGCGGACCACCCATATTTACCTGGCTACTTTGACCTTTCGTTTTCCG
CTCTTGCGCTTGTATATCCATCGCTCCTTATCCCTACGTACTTCGTTCAT
CCGGCCCTTTTTCATGTTCATTCGTATCAGCGGTTTGCTGTTCCCCGTTT
CCCTTGATTTTTTGATTTCTTAACTATCCAACCATCTTGTCTATTTACCT
TACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_e04.b1 MSMg01no069_e04.b1 CHROMAT_FILE:
MSMg01no069_e04.b1 PHD_FILE: MSMg01no069_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:58 2005
         (313 letters)



>mm_chr4_75704912_75705627
          Length = 716

 Score =  513 bits (265), Expect = e-150
 Identities = 301/315 (95%), Gaps = 11/315 (3%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcattctcta-ttcctttttcttttc-ttgttaaaaa-tccttaaacattcagtt 62
           ||||||||||||||| ||| ||||||||||| |||||||||| |||||||||||||||||
Sbjct: 206 ggaattcattctctagttc-tttttcttttcattgttaaaaaatccttaaacattcagtt 264

                                                                       
Query: 63  gtatttgctaaaccaccca---gataaatatagggaaacattttagcacaggtacacatt 119
           ||||||||||||||||  |   ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtatttgctaaaccac--aagagataaatatagggaaacattttagcacaggtacacatt 322

                                                                       
Query: 120 agatttgtgaaatctaaacatctaaaaaccaaattaaagctgacatagaatgggttgttt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agatttgtgaaatctaaacatctaaaaaccaaattaaagctgacatagaatgggttgttt 382

                                                                       
Query: 180 aggttgcactaatagctcgctatcatgaaaactggtcatcacaggacactgcacaagatg 239
           |||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 383 aggttgtactaatagctcgctatcgtgaaaactggtcatcacaggacactgcagaagatg 442

                                                                       
Query: 240 gaaactgag-agagtggatgtttacagtaaaagaccataccactagctcagtcacctcaa 298
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaaactg-gtagagtggatgtttacagtaaaagaccataccactagctcagtcacctcaa 501

                          
Query: 299 cttgtttaaggcatg 313
           |||||||||||||||
Sbjct: 502 cttgtttaaggcatg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 716
Length adjustment: 9
Effective length of query: 304
Effective length of database: 707
Effective search space:   214928
Effective search space used:   214928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)