BAC Information

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BAC

Clone NameMSMg01-069J07
Chromosome4 (Build37)
Map Location 137,694,211 - 137,694,433
singlet/doubletsinglet
Overlap geneEif4g3
Upstream geneWnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558
Downstream geneHp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069J07.T7 (MSMg01no069_j07.b1)MSMg01-069J07.TJ (MSMg01no069_j07.g1)
ACCAG293805AG293806
length719727
length of high quality
(start - end)
226 (47 - 272)39 (130 - 168)
definitionCHROMAT_FILE: MSMg01no069_j07.b1 PHD_FILE: MSMg01no069_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:22 2005CHROMAT_FILE: MSMg01no069_j07.g1 PHD_FILE: MSMg01no069_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATAAAGAGACCGCG
GAATTCTCTGGTTGCCCCCACCCTAGACACCTGGGCTTCCCCCTCCTCTT
CCCATAGGGCTTCTGTTCACATGAGGTCTCTTCTCAGCCCCTGCCCTTCA
GTTGGCACTATACCAGCGTCCTCACATTCCCAGGCCTCGACTGGGTTCCT
TTTGGCTGCGGACACACCCTTGACATTTTGGTTTTTTCACTTTAGAAATT
CCCATAGGAATCTAGAAAAGAAAAGCTGTCAATTTCTCTAGGAAACAAGG
AAAAGCTGAGAGAAGATATCTATTATGGAGCCTGTGGGGCGACGGTGCGC
ACCTTTGATTCCAGTACTCGCAGGATTCAGGTAGACGCCTGTCTGCAAGT
TCTAGGCTGTTCTGTCCCACACAGCATATTCCACGACTACCACCGTTATT
ATTTATGACCCTACCTACCACCTATTTAATTCCTACAAGCCCCCCTAAAA
CACCAATTAAATCTTACCACTCCACACCGTGAATTCCTGAATGAGCCCCG
ATATATCTCCCCTTAGTAACCCTCCCCCACATTTTATACCCTTGAACTGT
TGCTTTTCTGGTCCCATATGCACCCACGTTTTTTCCCCCCCCTCCGCTGA
TATCCTTCCTCCGGCCTATTCCCCCACCCCGTTATGTTAACACAATGTTT
TTTTCCCCTCCTTGTTTTT
TCATGACTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAGACCCAGAGAGAGAAACAGTTTAACT
AAGGTCTCAGAACTGGGCTCAGGGCCAGGATGCACTGTTTCCAAAACTCA
CTTCCTGTGCTGCAGAAGTAGGTTAGCCTTGGGCCCTAATCCCACATTTA
CTGGCCTTGATGCCCAGAGCAGGGTCTTGGCTTCCTCTAGGGACTAGGAC
TCTAGTTATACCACAGTACTAAGAGGACTCCCACTTCCTCATGTGTAGTA
TGTCCCCCGAACTTCTCCTATTATGTTTCTATAATATGATTGAATCAAAA
CATCTCTCTGGTATCTGTCACCCCCCTCCATGTCAAATAGAGATAGAGTC
TGGATTCCTGCTGCACCATGTGTACTCATATAACCCTCGTTCTCGCCTAT
ATAGACTGTTACGCCGCCCCTGTGTTATAACGAACTGCAACACGATTTAT
ATTTCCTCCGCATACCCTTTCACCCCCCTTTTTTCTCCTCACCTGCTCAC
TCTATTACCCCACCCTTTATTCTTTTTCCGTTGCACCCCGCACTCCAGGC
CCTTTCTTTTCCCACCCCCTTTATTTTTACCCTTACCCTTCTACTAAACT
CATCACCTTGATCCTCTCTTTAATTCCTTCCTCTTATTCCCTACTTGCCC
CCCTTTCTCCCTTCTCCTACCAGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_j07.b1 MSMg01no069_j07.b1 CHROMAT_FILE:
MSMg01no069_j07.b1 PHD_FILE: MSMg01no069_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:22 2005
         (226 letters)



>mm_chr4_137694008_137694633
          Length = 626

 Score =  406 bits (210), Expect = e-118
 Identities = 220/226 (97%), Gaps = 6/226 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctg---gttgcccccaccctagacacctgggcttccccctcctcttcccata 60
           |||||||||||   |||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggaattctctgggagtt---cccaccctagacacctgggcttccccctcctcttcccata 370

                                                                       
Query: 61  gggcttctgttcacatgaggtctcttctcagcccctgcccttcagttggcactataccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gggcttctgttcacatgaggtctcttctcagcccctgcccttcagttggcactataccag 310

                                                                       
Query: 121 cgtcctcacattcccaggcctcgactgggttccttttggctgcggacacacccttgacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cgtcctcacattcccaggcctcgactgggttccttttggctgcggacacacccttgacat 250

                                                         
Query: 181 tttggttttttcactttagaaattcccataggaatctagaaaagaa 226
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttggttttttcactttagaaattcccataggaatctagaaaagaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)