BAC Information

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BAC

Clone NameMSMg01-069O24
Chromosome4 (Build37)
Map Location 14,023,676 - 14,023,990
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039988, Runx1t1
Downstream geneLOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069O24.T7 (MSMg01no069_o24.b1)MSMg01-069O24.TJ (MSMg01no069_o24.g1)
ACCAG294077AG294078
length690728
length of high quality
(start - end)
321 (49 - 369)53 (126 - 178)
definitionCHROMAT_FILE: MSMg01no069_o24.b1 PHD_FILE: MSMg01no069_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:49 2005CHROMAT_FILE: MSMg01no069_o24.g1 PHD_FILE: MSMg01no069_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATCTGTTATATGCACTTAGACCCTATGATGAATCCCATGTGT
TTCCAACTATGTCAATCCCAGCTTTTCCCGTTTTCTAGAAGTTGCATGAA
AATTTAAATTGTGTCCGTCTCTTGAAACCACTGTGCAAATAAATGCCAGC
CATGTATATTGCTCAGAAGTAGGGGAAAACACACAACAATATTAGGGTTT
TCCATTGCCATCATCAGTTAGATAAAATTCCATTAGTTTTTGGTCTCTTT
CCTCTAAAGTCCAATTAGGATAAATCCTAACTCTTATGAAAAACCTGGAG
CCAATTATGATTATTTTGTTATTGCCTGCTCCCGATTCTCAGATGAGATT
AGAAGGAGTCCCAAGGCTTTTGACTTTCAAGATATGGAGCCAAAAGAAGT
TTAGAAGTGTGTAGTAAGTGTGAAAGTCTTTAGTCCTCTCTGCAGCCCTT
GTGGCTGTTCTTTGGCATCCTTTCTCTCAACTATTGATGCCATTCAGCCC
AACATAACAGGTTTCAGCATACCTTTACCTCCAGGTATCGCATATTGCCC
AGAGATCTTGGCTTTGTCCTTGAAAACGTTATGATGGATTTCTTTCTTTA
TTTTTTCAGGGAATTAGCAATTACTCATTTCACGATAACC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCTCTTGGTCTCATTGTTCACAACACAATGCCACATGCAGC
CGTGAACTCCCATACTCCTAAAGGCTTCCCATCTGATTGTGTGGAAAGAG
AAAGAGAACTCTCAGAAAAAGGCGACCAAGAGTCAACCAAACTTTTCTTC
TGCAGTAGATGTTTAATCCATGTATGACAATAATACTGGCGGTAGAAATC
TAGGTACAATAACTTATGAACTTTTTGCAACCCTACGGCTATACTCTTAC
ACGTCTCAATTTTGTTTACATCCTCGCATCATATACAAGATTTGTGTATT
TTTTTTTTTCCCCCCCCCCCCCCCACTGTATTGAATTATTCGTTGATTTC
CTTCCCCTCTTCCCAAAAAAAAAAAAATATACTGGGGGGGGCGGGGGGGG
TCCTCTTTTCCACTTGGTTTGCCCCTTTCAAACTTTTGCCATCGTTGTTA
TCCCCTTTTCCATCCTCCCCACGTCCCTGTTTCCCTCCCGATTTATACCT
CTCCATGATCCCTTCTTCCCTTATCTTTTTCCCTTCCTCCTTTTTCCACA
TCCTCTGATGCATCCCTTCCCTCACTTATTTATCATTGTATTCATTTCTA
CCTGTTATACTTTCCCCCTTTACGATTCATATCGTTTTATTATTAGAAGC
TCCATGCAAAATACATTTTAACCGTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_o24.b1 MSMg01no069_o24.b1 CHROMAT_FILE:
MSMg01no069_o24.b1 PHD_FILE: MSMg01no069_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:49 2005
         (321 letters)



>mm_chr4_14023473_14024193
          Length = 721

 Score =  571 bits (295), Expect = e-167
 Identities = 310/315 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatctgttatatgcacttagaccctatgatgaatcccatgtgtttccaactatg 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaattcatctgttatatgtacttagaccctatgatgaatcccatgtgtttccaactatg 459

                                                                       
Query: 64  tcaatcccagcttttcccgttttctagaagttgcatgaaaatttaaattgtgtccgtctc 123
           ||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 458 tcaatcccagcttttctggttttctagaagttgcatgaaaatttaaattgtgtcagtctc 399

                                                                       
Query: 124 ttgaaaccactgtgcaaataaatgccagccatgtatattgctcagaagtaggggaaaaca 183
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttgaaaccactctgcaaataaatgccagccatgtatattgctcagaagtaggggaaaaca 339

                                                                       
Query: 184 cacaacaatattagggttttccattgccatcatcagttagataaaattccattagttttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cacaacaatattagggttttccattgccatcatcagttagataaaattccattagttttt 279

                                                                       
Query: 244 ggtctctttcctctaaagtccaattaggataaatcctaactcttatgaaaaacctggagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggtctctttcctctaaagtccaattaggataaatcctaactcttatgaaaaacctggagc 219

                          
Query: 304 caattatgattattt 318
           |||||||||||||||
Sbjct: 218 caattatgattattt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)