BAC Information

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BAC

Clone NameMSMg01-069P09
Chromosome4 (Build37)
Map Location 89,670,846 - 89,671,276
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
Downstream geneZfp352, LOC619842, LOC435792, Ppia-ps4_804.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069P09.T7 (MSMg01no069_p09.b1)MSMg01-069P09.TJ (MSMg01no069_p09.g1)
ACCAG294095AG294096
length698695
length of high quality
(start - end)
468 (47 - 514)431 (71 - 501)
definitionCHROMAT_FILE: MSMg01no069_p09.b1 PHD_FILE: MSMg01no069_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:51 2005CHROMAT_FILE: MSMg01no069_p09.g1 PHD_FILE: MSMg01no069_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGACGAATACCGAATGGCAGAGAAGCACTTGAAAAAATG
TTCAACACCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAATAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCTTCCTGAGCGAGGTAACACATTCTCAAA
GAATCTCACACTATATGTATTCCCTGACAAGTGGATATTAGCCCCAAACC
TAGGATACCCAGGATATACGATATAATTTGCTAAACACATGAAATTCA
TCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTACCCGAGAAATTCACTCTGGATAAACAAAGTGTGTATCA
GATGATATGCCCTAGAAAGGTAGTCATCCTTATAAAATGCTACTCTGCAG
CTATGCTCTTCTCATTATCGTATTGCAAATAGTTTTCTGAAAGAAAAAAC
TGTTCAAGCAAAATATTAAACAGCATTCATTTGTCATTTTCCTGCAGGGA
CTAGGCAGCAACCTGCTGTGGATGAAAATATGTGGTCATTACGAAGCTGG
TATTGAATTGTTTGTTTATCTTTTAGCAGAGGAGAGCGGTTTCAATGATG
TTACTTTTTGATTGCTAATTTCCGACACTCTGCTTTCTACAGGCATATTT
TCTGTCCAGTGTTATTAATAGATGGATATGTAAATATGCTGTTAGTGTGT
TTTTTTAATGTTCACATAATATTCTGTGCTGCAATCTCTATTCAACTTAA
GAAATGACAAGAAGTTTCATTTCCTTGTTAGTGTGTGGTATCTTGTACTA
CAGTGAGTTAGATTGCTTGCTCTTCGAGGGGTTAGAATTACTTGTTATAA
ATGGAATGTGTAGGATGCCTAAGCTTGATAGGAATATAGATCTGGGTAAT
GGATCATTGGGAGATAGGATCCATCTACATTTGCTATTTGCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_p09.g1 MSMg01no069_p09.g1 CHROMAT_FILE:
MSMg01no069_p09.g1 PHD_FILE: MSMg01no069_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:51 2005
         (431 letters)



>mm_chr4_89670646_89671476
          Length = 831

 Score =  826 bits (427), Expect = 0.0
 Identities = 430/431 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcactctggataaacaaagtgtgtatcagatgatatgccctagaaaggtagtcatcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcactctggataaacaaagtgtgtatcagatgatatgccctagaaaggtagtcatcct 260

                                                                       
Query: 61  tataaaatgctactctgcagctatgctcttctcattatcgtattgcaaatagttttctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tataaaatgctactctgcagctatgctcttctcattatcgtattgcaaatagttttctga 320

                                                                       
Query: 121 aagaaaaaactgttcaagcaaaatattaaacagcattcatttgtcattttcctgcaggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaaaaaactgttcaagcaaaatattaaacagcattcatttgtcattttcctgcaggga 380

                                                                       
Query: 181 ctaggcagcaacctgctgtggatgaaaatatgtggtcattacgaagctggtattgaattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaggcagcaacctgctgtggatgaaaatatgtggtcattacgaagctggtattgaattg 440

                                                                       
Query: 241 tttgtttatcttttagcagaggagagcggtttcaatgatgttactttttgattgctaatt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tttgtttatcttttagcagaggagagcggtttcaatgatgttactttttgattgttaatt 500

                                                                       
Query: 301 tccgacactctgctttctacaggcatattttctgtccagtgttattaatagatggatatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccgacactctgctttctacaggcatattttctgtccagtgttattaatagatggatatg 560

                                                                       
Query: 361 taaatatgctgttagtgtgtttttttaatgttcacataatattctgtgctgcaatctcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaatatgctgttagtgtgtttttttaatgttcacataatattctgtgctgcaatctcta 620

                      
Query: 421 ttcaacttaag 431
           |||||||||||
Sbjct: 621 ttcaacttaag 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)