BAC Information

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BAC

Clone NameMSMg01-070D21
Chromosome4 (Build37)
Map Location 56,908,278 - 56,908,737
singlet/doubletsinglet
Overlap geneD730040F13Rik
Upstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1
Downstream gene6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513, Akap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070D21.T7 (MSMg01no070_d21.b1)MSMg01-070D21.TJ (MSMg01no070_d21.g1)
ACCAG294310AG294311
length681700
length of high quality
(start - end)
349 (46 - 394)466 (74 - 539)
definitionCHROMAT_FILE: MSMg01no070_d21.b1 PHD_FILE: MSMg01no070_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:14 2005CHROMAT_FILE: MSMg01no070_d21.g1 PHD_FILE: MSMg01no070_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCTACTATATTCAGAGGATCCGCGGAATTCTTCAGCCTAGGCCGCTAGG
CACTCTTCCCTATATAATCCAACCACTTTGGTTACAGACTCCCTTCGCAA
CACTGGGCTTCTAGCCAGTGCACCTGGATCCCCACTCGTTCCCTCCCCAC
TCTTCTCACAGGGCACAACTCATCTTCTGGTCATGTCCACTCTGGCCTGT
CCTGGATGTCACTGCCTCTGGCTATGCTCTCCCACACATCTTCATTAAAC
ATTTTCCTCCATCATACCTAAGAGCAGTCAAGGCCCTTCCTTCCTTTTTT
CATTCATTTGGGGCTGAAACCCAATATACAAAGAGAATGGGTAACCAAAA
TGGTTGGACAATATAGGAAAGAGCAGCCAGAGCCCTGCGCTAGACAGCTT
AGGGCAGGGGGTAGGGTACACCAGCCAGGAGGACCCTGTAAGGGTCAGGT
AGGAACTGAGGGATTGCAGGGAAAACCTGGCACCTCAGCCACTTGTCCTG
GTTTGAAACCTAAGTAAGGCCCAGGCTCACTACTTCTTTGCCAAAATTAA
CATAGGAAGTTGAGTTTGCTTTCTACTGAGTCAGGTCACTAGCAAACACT
ACAGCAGAAAAGGTATATGAGCTTATGACCTCAAGATCTTGGGTTTTTTC
TTTCAGATTTTACAGTATTTACACGTATACA
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACATAGAGAAA
CCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAAAAAAAAAGA
ATTTTCATACTGGGAGGATTATGTTCAAGTAGAAATATGATTCTTGTGTG
GATGAAGATTAATCAACAAACAATTATAAAGATTGTAGTTGATTCTCTGT
AAGTGCTCAGTGACAGCAGTTTTATAAATATGTCATCAGTATATGGTCAA
ATGAAAAATCATGAAGTTGATTTCATATAATACTTTAGTTAGGCATGAGT
GAGATTGGGAGTTAGTTGCATGGCATACAGAAGTGTGTGTCCTAAAGATT
GCCTCTGAGCTGTGGATTTCCTTTGTGATTACCGTGTGTGACTTTGAAAT
TTTGAACCTTATTTTAATTTTAAGTTCCTGTTATTCTAAACGGAGTGCAT
TTGTCACTGAGTTTTCATTTCATCTCAGGATTTTGAGGTAGTGGCATGCA
TCCTGGATCCCCAGCATTGGCCTCCCTTAAAGCATGCTGTCTCCTGAATG
CACACGTCACACCCTTCTCCCCGAGGCTCCCTCTGCTTGCTCTGGTGGAG
ATATTGCAAATTACTAAGTTGCATGTTGTCACGGCCTCAATGCAATTTAC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_d21.g1 MSMg01no070_d21.g1 CHROMAT_FILE:
MSMg01no070_d21.g1 PHD_FILE: MSMg01no070_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:14 2005
         (466 letters)



>mm_chr4_56908000_56908863
          Length = 864

 Score =  833 bits (431), Expect = 0.0
 Identities = 456/467 (97%), Gaps = 8/467 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggctacatagagaaaccctgtctcaaaaaaaaaaaaaaaaaaaaaaag 60
           ||||||||||||||||||||||||||||||||||||     |||||||||||||||||||
Sbjct: 738 caggacagccagggctacatagagaaaccctgtctc-----aaaaaaaaaaaaaaaaaag 684

                                                                       
Query: 61  aaagaaa-aaaaaaaagaattttcatactgggaggattatgttcaagtagaaatatgatt 119
           ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 683 aaagaaagaaaaaaaagaattttcatact-ggaggattatgttcaagtagaaatatgatt 625

                                                                       
Query: 120 cttgtgtggatgaagattaatcaacaaacaattataaagattgtagttgattctctgtaa 179
           ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 624 ctt-tgtggatgaagattaatcaacaaacaattacaaagattgtagttgattctctgtaa 566

                                                                       
Query: 180 gtgctcagtgacagcagttttataaatatgtcatcagtatatggtcaaatgaaaaatcat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtgctcagtgacagcagttttataaatatgtcatcagtatatggtcaaatgaaaaatcat 506

                                                                       
Query: 240 gaagttgatttcatataatactttagttaggcatgagtgagattgggagttagttgcatg 299
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 gaagttgatttcatataatactttagttaggcatgagtgagattgagagttagttgcatg 446

                                                                       
Query: 300 gcatacagaagtgtgtgtcctaaagattgcctctgagctgtggatttcctttgtgattac 359
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 gcatacagaagtgtgtgtcctaaagattgcctctaagctgtggatttcctttgtgattac 386

                                                                       
Query: 360 cgtgtgtgactttgaaattttgaaccttattttaattttaagttcctgttattctaaacg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cgtgtgtgactttgaaattttgaaccttattttaattttaagttcctgttattctaaacg 326

                                                          
Query: 420 gagtgcatttgtcactgagttttcatttcatctcaggattttgaggt 466
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagtgcatttgtcactgagttttcatttcatctcaggattttgaggt 279


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 864
Length adjustment: 10
Effective length of query: 456
Effective length of database: 854
Effective search space:   389424
Effective search space used:   389424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)