BAC Information

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BAC

Clone NameMSMg01-070H07
Chromosome4 (Build37)
Map Location 94,133,657 - 94,133,947
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070H07.T7 (MSMg01no070_h07.b1)MSMg01-070H07.TJ (MSMg01no070_h07.g1)
ACCAG294473AG294474
length746676
length of high quality
(start - end)
350 (134 - 483)291 (78 - 368)
definitionCHROMAT_FILE: MSMg01no070_h07.b1 PHD_FILE: MSMg01no070_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:32 2005CHROMAT_FILE: MSMg01no070_h07.g1 PHD_FILE: MSMg01no070_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNTTTTNNNNNNNNNNNCCCCCCCNNCCCNNNNCCTTTTCCCTTC
CNNNTACTACTTATNATTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCGCGGAATTCAGAGATCCCCCTGCCAACGAGTATCA
CAGATAATAAGCTAGCAGGGTGGGAACCCCTCCAGAAACTACCATTTCCA
CCATGCCTGGGTGTGGACTCATTATGTCCCAGGCTGACCTTGAACTCGGA
AATCTGCCTGCACACAGTATAGCTACCTCTGTTCCTTTAGATTTGTGAAG
CCCCTCATAATTCATATTGCATCCTTATATTTTTACATAGTTGAGAAATT
ATATATTTTCGAACTCATGTTTTTAGAGTTCTTTTCCACAGCCTAAGGGC
TGTCCTGAAGGTCCCAGCATTTACCACTTTCTAAAACATTAGCCACATCT
TCGCCTCCCAGACTCATGAATCTGAAAACGTAACACACAAACTATAGAGG
AAATGAGGCCATCAAGGGTGCTTGAGCTGTTACCTTGCAGAAGCTACAAA
GGCACACCTCTATAAATGGTGAACACGGCACACTTCCTAATTTGCTCTCC
TGGATTCCCACCTTGTATTTCCTAAGGCATCATGGAATGTTATTCACTGA
CACTTTTCTTTACCATCACATATCCATTTTTTGTACTTAGCTGGGCCTAC
CAGCTTTTAACCATTTGATGAAACAACTGTTTCCTTTTATTAGCTG
TTTTTACGATGATGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAAAATTCACATAAGAAGGT
CCTTTTTGTGCATTTTAGAAGAGACAGCAATTCAGTTCTTTCTCTGGTAT
GATATTGTAAGTGCTCAATGTGATGACTTTCCTAGCATTTACCCCCCAAA
ATAATAGTGTGACAATGTTGACCTAAGCCATTACAAAATGAGACTACAGT
CCATGATAGAACGGTGAGAAATGCAAATGAAAATTAGTTTAATCATTCTT
ATATTAAATGTATATTATTCTTATGTTAAATATTCATTATTAAATACTAA
ATTTGACAAAAAGAAGTTGAGGAAAAACTGAAACAGATTATCAACTAAGT
ATCTATTTGATATTGAAAAGATCAACAAACAAAGCCTAAGACTCAAAGGT
TTCAATTTCACCAAGAACAAAACACTAATACAAAGGAGCTTGGCAATCTA
ATAAAACAGTATACTTTCAACTCTGGTTTTTCTTCCCCTAAGAAATATGT
AATGAGAACATTTAAGGCAATCTTAAAACCACTGTAATTTTCTGTATCAA
CTCAAGCCTACAGCAACATCCTCCTTTCAGTTTCACTTTTCTCTCTATTG
ATCCAAATAAATACTAATTCTAAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_h07.g1 MSMg01no070_h07.g1 CHROMAT_FILE:
MSMg01no070_h07.g1 PHD_FILE: MSMg01no070_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:32 2005
         (291 letters)



>mm_chr4_94133457_94134147
          Length = 691

 Score =  524 bits (271), Expect = e-153
 Identities = 286/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagaaaattcacataagaaggtcctttttgtgcattttagaagagacagcaattcagtt 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagaaaagtcacataagaaggtcctttttgtgcattttagaagagacagcaattcagtt 260

                                                                       
Query: 61  ctttctctggtatgatattgtaagtgctcaatgtgatgactttcctagcatttacccccc 120
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 261 ctttctctggtatgatattgtaagtgctcaacatgatgactttcctagcatttacccccc 320

                                                                       
Query: 121 aaaataatagtgtgacaatgttgacctaagccattacaaaatgagactacagtccatgat 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaataatagtgtcacaatgttgacctaagccattacaaaatgagactacagtccatgat 380

                                                                       
Query: 181 agaacggtgagaaatgcaaatgaaaattagtttaatcattcttatattaaatgtatatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaacggtgagaaatgcaaatgaaaattagtttaatcattcttatattaaatgtatatta 440

                                                              
Query: 241 ttcttatgttaaatattcattattaaatactaaatttgacaaaaagaagtt 291
           ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 ttcttatgttaaatattcattattaaatactaaatttaacaaaaagaagtt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)