Query= MSMg01no070_h21.b1 MSMg01no070_h21.b1 CHROMAT_FILE:
MSMg01no070_h21.b1 PHD_FILE: MSMg01no070_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:35 2005
(365 letters)
>mm_chr4_89055678_89056448
Length = 771
Score = 596 bits (308), Expect = e-175
Identities = 346/366 (94%), Gaps = 14/366 (3%)
Strand = Plus / Minus
Query: 4 ggaattcctccttgcag-aaaccttcctgaagactaactgcttaggctcaaaatcatcct 62
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ggaattcctccttgcagaaaaccttcctgaagactaactgcttaggctcaaaatcatcct 360
Query: 63 ctctaccattgtcctatccagtatatttcaagaaaaccagaattatc-----aaaaaaaa 117
|||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||
Sbjct: 359 ctctaccattgtcctatccagtatatttcaagaaaagcagaatcatcaaaaaaaaaaaaa 300
Query: 118 aaaaatccctagtgttctgccagcttccacctccccacagtggcttctgtaataagagca 177
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aaaaatccccagtgttctgccagcttccacctccccacagtggcttctgtaataagagca 240
Query: 178 gacctacatcattagcaaggacaaagatttttagcaggaggtgtacaccagacatcccag 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gacctacatcattagcaaggacaaagatttttagcaggaggtgtacaccagacatcccag 180
Query: 238 gaccaagaatctgagacagtaagatctcaggatggaagttagcctgggctatacagggag 297
||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 179 gaccaagaatctgagacagta--------ggatggaagttagcctgggctatacagggag 128
Query: 298 accctgaaaagagaaaggtggcagaggaagaaggggaaaaggaggaagaggggagggagg 357
||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||
Sbjct: 127 accctgaaaagagaaaggtggaagaggaggaaggggaaaaggaggaagaggagagggagg 68
Query: 358 gagtgg 363
||||||
Sbjct: 67 gagtgg 62
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 771
Length adjustment: 9
Effective length of query: 356
Effective length of database: 762
Effective search space: 271272
Effective search space used: 271272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_h21.g1 MSMg01no070_h21.g1 CHROMAT_FILE:
MSMg01no070_h21.g1 PHD_FILE: MSMg01no070_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:35 2005
(611 letters)
>mm_chr4_88821649_88822660
Length = 1012
Score = 1151 bits (595), Expect = 0.0
Identities = 609/615 (99%), Gaps = 4/615 (0%)
Strand = Plus / Plus
Query: 1 acttttttatagaccaggaagggtggtggtgatagcggtggctgcggcagtcactgctgg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 acttttttatagaccaggaagggtggtggtgatagcggtggcggcggcagtcactgctgg 260
Query: 61 ttgacatctgtgggcttttcagaa-taacattgggttgctttaaggcctttcctctaaga 119
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgacatctgtgggcttttcagaaataacattgggttgctttaaggcctttcctctaaga 320
Query: 120 tgaagagcagtgtttgggctcaggggattaaatttggagtaaacagacttacaacacagg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagagcagtgtttgggctcaggggattaaatttggagtaaacagacttacaacacagg 380
Query: 180 tttgttttcatctgttcaggcagctatgagaaaaatcccattagaagtagcttctagacc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgttttcatctgttcaggcagctatgagaaaaatcccattagaagtagcttctagacc 440
Query: 240 aaaaagaaggcctt---tttacatttcaaggggttgaaaactctaagatcaagactgact 296
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaagaaggccttgtttttacatttcaaggggttgaaaactctaagatcaagactgact 500
Query: 297 ggctatatgtctggtgagaacctattttagtcctatcttcaccaaacctcacatgacata 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggctatatgtctggtgagaacctattttagtcctatcttcaccaaacctcacatgacata 560
Query: 357 taattcatgttttagttacttttaaattgttgtgataagaaccatgaccaagacacctta 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taattcatgttttagttacttttaaattgttgtgataagaaccatgaccaagacacctta 620
Query: 417 tagaagaaggagtttactagagactcacagttcagagggcagggcggataggagcaggca 476
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagaagaaggagtttattagagactcacagttcagagggcagggcggataggagcaggca 680
Query: 477 ggtaggcatggcgctggagcagtatggcacacctcctccagcaagattacatttcctaat 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtaggcatggcgctggagcagtatggcacacctcctccagcaagattacatttcctaat 740
Query: 537 ccttcccaaacagttccaccaactagggaccaaacattcaaacagataagcctatgggac 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccttcccaaacagttccaccaactagggaccaaacattcaaacagataagcctatgggac 800
Query: 597 cattctcattcaaac 611
|||||||||||||||
Sbjct: 801 cattctcattcaaac 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1012
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1002
Effective search space: 602202
Effective search space used: 602202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
