BAC Information

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BAC

Clone NameMSMg01-070N10
Chromosome4 (Build37)
Map Location 22,894,045 - 22,894,501
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040379, Fbxl4, Pou3f2, LOC664911, 1700025O08Rik
Downstream geneLOC625462, LOC383998, LOC100040464, LOC623873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070N10.T7 (MSMg01no070_n10.b1)MSMg01-070N10.TJ (MSMg01no070_n10.g1)
ACCAG294765AG294766
length705702
length of high quality
(start - end)
585 (39 - 623)458 (67 - 524)
definitionCHROMAT_FILE: MSMg01no070_n10.b1 PHD_FILE: MSMg01no070_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:02 2005CHROMAT_FILE: MSMg01no070_n10.g1 PHD_FILE: MSMg01no070_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCAA
GGTACATACCTAAACGTAATAACAGCAACATATAGCAAACCAACAGCCAA
CATCAAATTAATGGAGATAAACTTGAAGCCTTCCCACTAAAATCATGGAC
AACAATGTGGTCTTACATTCAGTTTTTGAAGGCAACCAAGAGCAATGGCA
GTAGCTTATATTATTTTGAGAGTTTCTTTGACTCTTCTGACAAATAACTA
AAAGGAAGATTCCTTGTACTTGGCGCTGGGGATTCTGTAACACAGTCTTT
CATTATCTCCCTAAGAAATGTAACTTCATTCAACACACATGCTTGTGCAC
AAGCGCGTGCGCACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACCAGTTTGAGGCCAGCCTGGT
CTACAAAATGAGTTCCAGGACAGCCAGAGCTATACAGAGAAATCCTGTCT
CCAAACAAACAAACAAAAACCCAAACAAACAAACAAACAGACAAACAAAA
CAAAACAAAATAATACAAAATAGGAAAACATAACATACAAGCAAAGGATC
AGTCAGACAAAAAAGAAAATGACCAAGCAAAGCAATATGAGACAAAAGTT
ACATAAATACTATTAAATCCATTTTGTGTTTGCCATCTACTGCTTGGGGT
GGGAC
ATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTTGGTACAGCGACACAGCAAGAGTGACACACT
GTTTTAGAACTTGCCAGAGCTCCACTAATGCCAGGAATAGGTAGGAATAT
GACAGTGTCTAGAAAGGGGCCTCGGGTGAGGAACTGCGTACTTAGATATC
AGTAGTACTTTGTGCTATTTTCCAGTGTTTACTTAGAGTATTGCTTAGAA
CAACCCAGTTGTTTAAGGGAGCCCCAACTGAGTTACCCATGCTCTCATTG
CTCTGCTTCTATGGAAACTAAACAACTGGAAAAAGCTGAAGGGAAACCTT
ATCATAGATGTCACCATCATGCAGACACTGGCAGGAGCTGATGGAAGTCA
TGGTCCTGACAGTTGTTTTCCTGTACCATTTAGGATGATGACTTCATGCC
TTAAAAAAAATAACTGCATTGAGTTCTGCTACTAGGAATAATAATGGCCA
CTTGCAAAACCCTCTGAACCCTGGAAAACAGAAGCTCAGAGAAAATCACA
GAGAAAACCAAAACAGTGTATGATATACAAAACAAACAAACAAAATAATT
CACAGTTCTGAGTTCAAAAGTGAGGGGTATCTGAGTGTAGGGTTATCTTA
TCCCATCCTATGTCTTGGATATCTGACTCAGCTACAGCATAGCTCTTAGA
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_n10.g1 MSMg01no070_n10.g1 CHROMAT_FILE:
MSMg01no070_n10.g1 PHD_FILE: MSMg01no070_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:02 2005
         (458 letters)



>mm_chr4_22893845_22894702
          Length = 858

 Score =  853 bits (441), Expect = 0.0
 Identities = 453/457 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttggtacagcgacacagcaagagtgacacactgttttagaacttgccagagctccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 acttggtacagcgacacagcaagagtgacacactgttttagaacttgccagagctccact 598

                                                                       
Query: 61  aatgccaggaataggtaggaatatgacagtgtctagaaaggggcctcgggtgaggaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aatgccaggaataggtaggaatatgacagtgtctagaaaggggcctcgggtgaggaactg 538

                                                                       
Query: 121 cgtacttagatatcagtagtactttgtgctattttccagtgtttacttagagtattgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 cgtacttagatatcagtagtactttgtgctattttccagtgtttacttagagtattgctt 478

                                                                       
Query: 181 agaacaacccagttgtttaagggagccccaactgagttacccatgctctcattgctctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 agaacaacccagttgtttaagggagccccaactgagttacccatgctctcattgctctgc 418

                                                                       
Query: 241 ttctatggaaactaaacaactggaaaaagctgaagggaaaccttatcatagatgtcacca 300
           ||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 417 ttcaatgtaaactaaacaactgaaaaaagctgaagggaaaccttatcatagatgtcacca 358

                                                                       
Query: 301 tcatgcagacactggcaggagctgatggaagtcatggtcctgacagttgttttcctgtac 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 357 tcatgcagacactggcaggagctgatggaagtcatggtcctgatagttgttttcctgtac 298

                                                                       
Query: 361 catttaggatgatgacttcatgccttaaaaaaaataactgcattgagttctgctactagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 catttaggatgatgacttcatgccttaaaaaaaataactgcattgagttctgctactagg 238

                                                
Query: 421 aataataatggccacttgcaaaaccctctgaaccctg 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 aataataatggccacttgcaaaaccctctgaaccctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)