CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCTGCGCGGA
ATTCCTGATCTTTTCATAAAATAAACATGAAGAGGTATTGTATTTTGTCA
AATATTTTTCAGTATCTAATGAGGTGACCCAGTGATTTTTTTCCTTTGAG
TTTGCTTATATAGTGGATTATGTTAATGGATTTTTGTATATTTAACCAAC
CTTACATTCCTGGGATGAAGTCTACTTGGTTAATGGTGGATGATGTTTTT
GATGTGTTCTTGGCTTTTGATGTGAGAAAATTTTATTATTTATGCATCGA
TATTCATAGGGGAATTNGGTACNTAAGTTCTTTTTTCTTGTTGGGTCCTT
GTGTAGTTTAGGTATCACAGCAATTGTGGATTGATAGAATGAACTAGGTA
GTGTTCCTTCATAACCAACCCCAAAAATTCAACCAGAGAAATTCTACAGC
TGATAAACATCTTCAGCAAAGTGGCTAGATATAAAATTAGCTCAAATAAA
TCAGTAGCCTTCCTTTACAAATGATAAACAGGCTGAGAAAGACATTAGAG
AAACTACACCCTTCACAATGTTCACAAATAATATAAAATATCTTGGAGGG
AACTCCATATTATTAATTGAAAAGATCCTCTGAAACAATAATTTCAAGTC
TTTTCTTTATTAAAATTGAAGAAGATCTCAGAAAATGTAGAGATCTCCCT
TGATC

CCATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTGGGAGGATTATTATTACAGGGCCCTCT
TCTTTTTGTGGAGAAATACACCATTGCTTAAGTTATTCATTCAGTGCAGT
ATGTAGCTTTCTAAGAATGTAGGCTTTTAAAGTAGATATATATGAAAAAA
CATTTGAAACTTTACAGTATAACTTGCATGTTACAGGTTTTCTTAGAATA
TATATTTTGATGAAAGGTATAAACAAATTATAGACAAAATGATTATTTCA
GAAAAAAATCAATACTGTGTGGAATGTCAAGAAATTTTGAGGATGCTCTA
AACATAAGCGAAGACTTCATTTTATGCAAATAATAAAGAAGGCAATGCAA
AGTGACTTTCTGACACAACCTCTTTACAAAATGTATTTACATGACTTAGA
AAGAAATAAAAGGGAAACATAAAAGGGGTCTAATATACATGACTCAAAAT
GCATATTCACTACATACTAAAATGCAAGCTATATTTTAAAACCTGAAAAA
TCACAAGTGTGATAGATATGCAGATATAAAAGTATATACATATTATATTT
AATAGGATATTTAGAATGCTATATGTATATATGTTTGTGCACGTCATTGT
TACTGATAACACCTTTGACCTGATGAGCTGTTTCTAGACATTAGAAT

Query= MSMg01no071_l11.g1 MSMg01no071_l11.g1 CHROMAT_FILE:
MSMg01no071_l11.g1 PHD_FILE: MSMg01no071_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:13 2005
         (590 letters)



>mm_chr4_23503941_23504931
          Length = 991

 Score = 1073 bits (555), Expect = 0.0
 Identities = 582/591 (98%), Gaps = 1/591 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgggagga-ttattattacagggccctcttctttttgtggagaaatacaccattgctt 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 791 agtgggaggatttattattacagggccctcttctttttgtggagaaatacatcattgctt 732

                                                                       
Query: 60  aagttattcattcagtgcagtatgtagctttctaagaatgtaggcttttaaagtagatat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 731 aagttattcattcagtgcagtatgtagctttctaagaatgtaggcttttaaagtagacat 672

                                                                       
Query: 120 atatgaaaaaacatttgaaactttacagtataacttgcatgttacaggttttcttagaat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 atatgaaaaaacatttgaaactttacagtataacttgcatgttacaggttttcttagaat 612

                                                                       
Query: 180 atatattttgatgaaaggtataaacaaattatagacaaaatgattatttcagaaaaaaat 239
           | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 611 acatattttgatgaaaggtataaacaaattatagacaaaacgattatttcagaaaaaaat 552

                                                                       
Query: 240 caatactgtgtggaatgtcaagaaattttgaggatgctctaaacataagcgaagacttca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 551 caatactgtgtggaatgtcaagaaattttgaggatgctctaaacataagcgaagacttcg 492

                                                                       
Query: 300 ttttatgcaaataataaagaaggcaatgcaaagtgactttctgacacaacctctttacaa 359
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 491 ttttatgcaaataataaagaaggcaatgcaaagtgactttctgatagaacctctttacaa 432

                                                                       
Query: 360 aatgtatttacatgacttagaaagaaataaaagggaaacataaaaggggtctaatataca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aatgtatttacatgacttagaaagaaataaaagggaaacataaaaggggtctaatataca 372

                                                                       
Query: 420 tgactcaaaatgcatattcactacatactaaaatgcaagctatattttaaaacctgaaaa 479
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 371 tgactcaaaatgcatattcactacatactaaaatgcaagctatattttgaaacctgaaaa 312

                                                                       
Query: 480 atcacaagtgtgatagatatgcagatataaaagtatatacatattatatttaataggata 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atcacaagtgtgatagatatgcagatataaaagtatatacatattatatttaataggata 252

                                                              
Query: 540 tttagaatgctatatgtatatatgtttgtgcacgtcattgttactgataac 590
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttagaatgctatatgtatatatgtttgtgcacgtcattgttactgataac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 991
Length adjustment: 10
Effective length of query: 580
Effective length of database: 981
Effective search space:   568980
Effective search space used:   568980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)