Query= MSMg01no072_a16.b1 MSMg01no072_a16.b1 CHROMAT_FILE:
MSMg01no072_a16.b1 PHD_FILE: MSMg01no072_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:39 2005
(565 letters)
>mm_chr4_95540654_95541618
Length = 965
Score = 849 bits (439), Expect = 0.0
Identities = 510/563 (90%), Gaps = 45/563 (7%)
Strand = Plus / Plus
Query: 1 acagcttaagaagctctgctgcctcactgtcctcttgggagtagttctcagaggatatca 60
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 201 acagcttaagaagctctgctgccttactgtcctcttgtgagtagttctcagaggatatca 260
Query: 61 cacttctcgtgtctatttccttttccctcgtgtctctcagaagaggccatgggatatcct 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 cacttctcgtgtctatttccttttccctcgcgtctctcagaagaggccatgggatatcct 320
Query: 121 actctgtcagtctctatcccattccactgacacagaatatctcgttgaatggatacatgg 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actctgtcagtttctatcccattccactgacacagaatatctcgttgaatggatacatgg 380
Query: 181 gctggtagccatcaaggctcaatgtttcttctgtctcagccctctatgcctgctttgtag 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 gctggtagccatcaaggctcaatgttccttctgtctcagccctctatgcctgctttgtag 440
Query: 241 gtgggtgttgtgatctgaactcagcacctaattcatatgcaacaagctgtcctcaggccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 gtgggtgttgtgatctgaactcagcacctaattcatatgcaacaagctgtcctcaagccc 500
Query: 301 ctggtctagtttcttaagcattgtgcctctggtgttttgttttgttttgttttgttttgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggtctagtttcttaagcattgtgcctctggtgttttgttttgttttgttt-------- 552
Query: 361 tttgttttgttttgttttgttttgttttgttttgtttcacctgggatacgtgggtaaaca 420
|||||||||||||||||||||||
Sbjct: 553 -------------------------------------cacctgggatacgtgggtaaaca 575
Query: 421 ttggttctgccacagacagttatatgtgaagatcaatggtaaagcagttagagatatatc 480
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 576 ttggttctgccacagacagttatatatgaagatcaatggtaaagcagttagagatatacc 635
Query: 481 tgttactccataaatgcaagttgtgccattgtttgtcaatttcctacaaccctcttttca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tgttactccataaatgcaagttgtgccattgtttgtcaatttcctacaaccctcttttca 695
Query: 541 tctttcttccctttcctcctacc 563
|||||||||||||||||||||||
Sbjct: 696 tctttcttccctttcctcctacc 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_a16.g1 MSMg01no072_a16.g1 CHROMAT_FILE:
MSMg01no072_a16.g1 PHD_FILE: MSMg01no072_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:39 2005
(553 letters)
>mm_chr4_95663342_95664295
Length = 954
Score = 828 bits (428), Expect = 0.0
Identities = 446/452 (98%), Gaps = 1/452 (0%)
Strand = Plus / Minus
Query: 103 actgggctgccttgcctggcctcagtgggagaggatgtgcctagccctatagagatttga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 actgggctgccttgcctggcctcagtgggagaggatgtgcctagccctatagagatttga 895
Query: 163 tgtgccaggatgggaggatacacagggggagcttccaccctctcaaaaggagaaaggagg 222
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 tgtgtcaggatgggaggatacacagggggagcttccaccctctcaaaaggagaaaggagg 835
Query: 223 gggtttgagggaggaactatgctatgggagaaccaggagaagggggattcagtgataggg 282
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 834 gggtttgagggaggaactatgctaggggagaaccaggagaagggggattcagtgataggg 775
Query: 283 ttttaaagtaaataaagaaaggggaggaaaagatgcctaatattacccatgggggagggg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ttttaaagtaaataaagaaaggggaggaaaagatgcctaatattacccatgggggagggg 715
Query: 343 aagctggatgtctatataagaaatacctaaaaatgcatttggcctctcctattattcttt 402
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 aagctggatgtctatacaagaaatacctaaaaatgcatttggcctctcctattattcttt 655
Query: 403 ctctagaccacctagattaggttatatatagggaaaaaggtcactttccctagt-aaaaa 461
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 654 ctctagaccacctagattaggttatatatagggaaaaaggtcactttccctagtaaaaaa 595
Query: 462 aatgctatcataggatcctgagtctttgagctctttcttcaatctcagacaaaaagatag 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aatgctatcataggatcctgagtctttgagctctttcttcaatctcagacaaaaagatag 535
Query: 522 aaattgtgtgcgtgtatgtgcgtttgcgtgcg 553
|||||||||| ||||||||| |||||||||||
Sbjct: 534 aaattgtgtgtgtgtatgtgtgtttgcgtgcg 503
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 954
Length adjustment: 10
Effective length of query: 543
Effective length of database: 944
Effective search space: 512592
Effective search space used: 512592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
