BAC Information

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BAC

Clone NameMSMg01-072C11
Chromosome4 (Build37)
Map Location 33,245,522 - 33,245,882
singlet/doubletsinglet
Overlap geneGabrr1
Upstream geneLOC665232, Bach2, Gja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2
Downstream geneAcy1l2, Srrp, Pnrc1, Rngtt, LOC100041919, LOC100041924, Cnr1, Spaca1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072C11.T7 (MSMg01no072_c11.b1)MSMg01-072C11.TJ (MSMg01no072_c11.g1)
ACCAG295767AG295768
length695701
length of high quality
(start - end)
485 (69 - 553)332 (69 - 400)
definitionCHROMAT_FILE: MSMg01no072_c11.b1 PHD_FILE: MSMg01no072_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:47 2005CHROMAT_FILE: MSMg01no072_c11.g1 PHD_FILE: MSMg01no072_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGCGCTAAACGACTCCTATTTGCAGAGATACCGCGGAATTCAT
TATATGTATCCTATAGAGCCAGGCTGGTGAACTTATTACATACTATGTAG
CCAGGCTGGAGAACTCATTATACACTATGAGCTAGGCTGGCCTGAACTCA
TTATATACTATGCATCCAGTCTGGCCCTCTGGCTCAGTATCACCAGTTCT
AGTGGCTCCAAGGCCACTAGTTTTGTAGGCAATTTTTGATCCACCAATAT
ATCAGAGCCAACTGCCCAGATAAATATTGGTTAAGGCTCAAAGGAAAGCC
ATGTGAGTATGTTTGTTTGAGATGACTGCCTTGCTAAGTTGGCCCTGCAT
TCTTGAAATGCTCACCAGAGCCTCTCCTCTCTAGCAACAAAGAAGTTCCT
ATTCAGACTGGTGTTCTCTGCTTATCATGGAGAACACAAAGGCAGAGTAC
AGCTTAATGGACCACTGGTTGTCACTCTATGTCTAGATAAAATATACTGT
GCTTATACTTCAAAACACATCTCTTCCCATGTAGAAATCACGAAAGGAGC
CAGGCATGTCAGGAGTTCAAGGCCATTGTCAGCTACATCGTGAGTTTGAG
GCTGGTCAGAGCATCCTAAAACTCTTTCACAAAATCGATAAATTAAAAAA
GATAAGAAACACAGGGGGTGGGTTGTTAGTCAGTGCTTCTTTGAC
TGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATCTCCTGAGACATATATAATTCGTTTTGATT
TTTGATGGTGTTTTTGTTGTTTGCAAAATGTAGAGAGAGTTTTACAGATG
GCTATAAAATATTTGACTAAGTGTGGACTGATGATGGCTTCAAAAAAGAT
TCAGCATGGTAAACTTTTAGGCTATTTGAGACATTTAGTATATAGAGATT
GTGTGTTTTCTCAGAGAATTACCCTCAGATTAAATAAATTGGAAGTTTTA
GATGCTTGCCAGAAGCTGTCAGAAAATTTGGGGTTTTAATCTTGGTTTGA
CAAGCTGCCTCTTACAAGCAGGAAAGGAAAGGAAGGAATTTTTTTTTAAA
AAAAAAATGGACCTTAGAACTCTCCCAGGGACAGAGAAATCGGTGGACGC
CCTGTTTTATCCTCTCTGGTCCCTACAGGAAAAGTTCTCTACCCTCTTTT
TATTGTGCATGTTTGGCGCACCAACTATGCGTCAATTCATGTATGTTCTT
GTTTAGCTTGTCTAACCGTATGATCCTCTCCCTAACCGTCTGTCTTAATT
CTAATATTCCTGGCTCCCTATTTTACTTGTGATATTCTTTTCCGTATGTT
TTCTTCACGTTACGATTGTTCCCTCTCTCTATTCTCTTTTCTTCCCTCCC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_c11.b1 MSMg01no072_c11.b1 CHROMAT_FILE:
MSMg01no072_c11.b1 PHD_FILE: MSMg01no072_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:47 2005
         (485 letters)



>mm_chr4_33245322_33246206
          Length = 885

 Score =  652 bits (337), Expect = 0.0
 Identities = 355/361 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaggctggtgaacttattacatactatgtagccaggctggagaactcattatacactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaggctggtgaacttattacatactatgtagccaggctggagaactcattatacactat 260

                                                                       
Query: 61  gagctaggctggcctgaactcattatatactatgcatccagtctggccctctggctcagt 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctaggccggcctgaactcattatatactatgcatccagtctggccctctggctcagt 320

                                                                       
Query: 121 atcaccagttctagtggctccaaggccactagttttgtaggcaatttttgatccaccaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcaccagttctagtggctccaaggccactagttttgtaggcaatttttgatccaccaat 380

                                                                       
Query: 181 atatcagagccaactgcccagataaatattggttaaggctcaaaggaaagccatgtgagt 240
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatcagagccaactgcccagacaaatattggttaaggctcaaaggaaagccatgtgagt 440

                                                                       
Query: 241 atgtttgtttgagatgactgccttgctaagttggccctgcattcttgaaatgctcaccag 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtttgtttgagatgactgccttgctaagttggccctgcattcttgaaatgctcaccag 500

                                                                       
Query: 301 agcctctcctctctagcaacaaagaagttcctattcagactggtgttctctgcttatcat 360
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 agcctctcctctttagcaacaaagaagttcccattcagactggtgttctctgcttatcat 560

            
Query: 361 g 361
           |
Sbjct: 561 g 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)