XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAACACACCTCTCTTATCATCTGACAGATCATAGAAACACAAACTAAATA
GAAACACAGTGAAGCTATCAAAAGTTATGGACCAAATGGATTTTACAGAT
ATCTATAGAACATTTCACCCTAAATCAAAAGAATATACCTTCTTCTCAGC
ACCTCATGGTACTTTCTCCAAAATTGACTGTATAATCAGTCATAAATCAG
ACCTCAACCAATATAAGAAGATTGAAATAATCCCATGCTACTGGTATAGA
GACAGACAAGTAGACCAATGGAACAGAATTGAAGACCCAGAAATGAACCC
ACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGT
GGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTA
TCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGT
CAAATCTAAGTGGATCAAGGGACTTCACATAAAACCAGAGACACTGAAAC
TTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAA
AAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGATAATCGA
CAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAA

AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTATTACCCTTTCTACAGATAAGTGTCTT
GTACTAAGTGGTGTAGAAGAGATGCGTGAACTGGTTTGATAACACTAGAA
ATCTCTCTTATTTGCTTTTTTCTTTTTTTCATTCATCTTTAACCAAAGAA
CAAGACCATGCTTTGAGTTAATTGTAGGAAAATAAATATTTTTATTATAA
TTTGGGAATTAAATCTGTCTCTTTGTGTATGAGGTCATATAATTCCCACA
TTCTCATTTCTTTACCTCTTACTTTCATAAGTGCCTCTCAAATGCTGATC
CATACACATCCCACACACTATCTCTTTTGATACAACAACCCAAATAAAGA
TTATCATTATCCCCACTTTATAAAGGGAAGATAAGCAGAGCTGAAAAAGT
TAGGGGTGCTGTGGTATATCATTCAACCAGTCAATGATGGGACCAGCCTT
GGAATTCAGGGAACTTGACACATGCTGCAATCTCCTTTGGCTTTCATTGT
AGCTGTATGGTGCCTCTTTGTGCATAAATTTTGCGGGGCTGAAGAGAGAT
TTAAAGAGGGAAATGGCAGTTTATGTTTACTGTGAAGGCAATCCTACTAC
TTTCTAACAAAGAGGTGTTCTCCCAACAACTCTTAGAAAACTA

Query= MSMg01no072_m11.g1 MSMg01no072_m11.g1 CHROMAT_FILE:
MSMg01no072_m11.g1 PHD_FILE: MSMg01no072_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:38 2005
         (596 letters)



>mm_chr4_13399384_13400380
          Length = 997

 Score = 1100 bits (569), Expect = 0.0
 Identities = 590/597 (98%), Gaps = 1/597 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattaccctttctacagataagtgtcttgtactaagtggtgtagaagagatgcgtgaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattaccctttctacagataagtgtcttgtactaagtggtgtagaagagatgcgtgaact 260

                                                                       
Query: 61  ggtttgataacactagaaatctctcttatttgcttttttctttttttcattcatctttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 ggtttgataacactagaaatctctcttatttgcttttttctttttttcattcatctttag 320

                                                                       
Query: 121 ccaaagaacaagaccatgctttgagttaattgtaggaaaataaatatttttattataatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaagaacaagaccatgctttgagttaattgtaggaaaataaatatttttattataatt 380

                                                                       
Query: 181 tgggaattaaatctgtctctttgtgtatgaggtcatataattcccacattctcatttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggaattaaatctgtctctttgtgtatgaggtcatataattcccacattctcatttctt 440

                                                                       
Query: 241 tacctcttactttcataagtgcctctcaaatgctgatccatacacatcccacacactatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacctcttactttcataagtgcctctcaaatgctgatccatacacatcccacacactatc 500

                                                                       
Query: 301 tcttttgatacaacaacccaaataaagattatcattatccccactttataaagggaagat 360
           |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tcttttgatacaacaaccaaaataaagattatcattatccccagtttataaagggaagat 560

                                                                       
Query: 361 aagcagagctgaaaaagttaggggtgctgtggtatatcattcaaccagtcaatgatggga 420
           |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 aagcagagctgaaaaatttaggggtgctgtggtataccattcaaccagtcaatgatggga 620

                                                                       
Query: 421 ccagccttggaattcagggaacttgacacatgctgcaatctcctttggctttcattgtag 480
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 ccagccttggaattcagggaacttgacacatgctgcaatctcctatggctttcattgtag 680

                                                                       
Query: 481 ctgtatggtgcctctttgtgcataaattttgcgggg-ctgaagagagatttaaagaggga 539
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 ctgtatggtgcctctttgtgcataaattttgcgggggctgaagagagatttaaagaggga 740

                                                                    
Query: 540 aatggcagtttatgtttactgtgaaggcaatcctactactttctaacaaagaggtgt 596
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatggcagtttatgtttactgtgaaggcaatcctactactttctaacaaagaggtgt 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 997
Length adjustment: 10
Effective length of query: 586
Effective length of database: 987
Effective search space:   578382
Effective search space used:   578382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)