CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGCACTAAATCTCATCTCATCCCAGGCCTTTTTGTTGTTGTTGTTGT
TGTTGTTGTTGAATATGGGATTCTTGTGCCTTTTTGTGGCCTCTTTTCCT
CCCATGTGTTTTGTCCTATTCTGATATGTTTTTTAAACTATTACTATATT
ATGTTTACTTTTTTTCTTGTCCCTTAGAAGCTTGTTTGTTTACTATTGAG
AGACAGAAAGGGAGTGGAGGATGGGAGAGGGAGGAGAAAGCACAATCACA
TCATATTATATGAGAACAATCTATTGTCAATAAAAGACAAAACTAAATAT
TACAAGATACTAATAATGAAAAACAGCTTGTTTGGAAGTTTTGGGTGCAA
TAGGATTTTTTGTGTGTTTTCGTTTTGTTATAGTTTGGCGTTGTTTTCTT
GGTTTGTGGGATGATTGATATAATTTCTTTTTATTTCTCTCTCTCTTTCT
CCCCTTTATTTTCTTCTTTTTCTATCCTTTTCCCCTTTCTTTTCTCTTTT
TTTCACTTTTTCTTTTTTCACCTCTTTCTCTTTTTTCTTCTTCTCTTCCC
TTTTTCTTTTCTCTCCGTTTTCCCTTCTCTCCTTTCTCTCTACTCCTCCC
TTTTTTCTTTTTTTACTTTTCTTTTTTCTTCTCTTTCCCCTTTCTTCTTT
TTTCCTTTTTCTACT

AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTACATTAAGACAAGCATTTTGCAGGA
AGCTATGATTATCCCGATAAAGTTTACAATCCTGGTGAGACAAAAGAAGT
ACAGCTACAACAGAATCACAAATAAGGCCTTGCAAAAAAGGTGCCCAAAC
TATAAGTCACAGTCAAAAGATAAAACAGCCTTAGGAAACATCTAGAAATG
CTTCCTGGATTGAAAAAAAAAATGTGGTGAGGGAGCAGTTGATCCTGCAA
ATGAGAGAAGCCAAAGATCCAGATGGAAATCAATCTAGGAGCTGAGCTTC
ATTACCAGAGAAACGAGAACAAACAAATGTAGCCTGGGTTTGTGGGTGGA
GGCTACACAGGTCCTTGATAGCACTTGAAGTTCAGGTTTATTTGGAAAAT
TACAAATCCAAAAACAAACAACAAAAACATTAAAAGCAACAAAAAACGTA
ATAAGGTGTTGAGGGATTTTAACAAGAAACCAACTTTCACTTTTGTTCAC
TGCAATTTATTGTTCACACAAATGTCATTTAACAACTAAACATTTGTGCA
GACTTGTTATATAATCTAAGCATCTGCTTTTGCCTAACTGAAAATACTTT
ATTGCGCTTGTTTCTTAGATCTCATCAGTCTCCAAATGAGTCATAATACT
TCCTCTCTGTATGATG

Query= MSMg01no073_a18.g1 MSMg01no073_a18.g1 CHROMAT_FILE:
MSMg01no073_a18.g1 PHD_FILE: MSMg01no073_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:00 2005
         (577 letters)



>mm_chr4_18953709_18954686
          Length = 978

 Score = 1110 bits (574), Expect = 0.0
 Identities = 577/578 (99%), Gaps = 1/578 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctacattaagacaagcattttgcaggaagctatgattatcccgataaagtttacaatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctacattaagacaagcattttgcaggaagctatgattatcccgataaagtttacaatcc 260

                                                                       
Query: 61  tggtgagacaaaagaagtacagctacaacagaatcacaaataaggccttgcaaaaaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtgagacaaaagaagtacagctacaacagaatcacaaataaggccttgcaaaaaaggt 320

                                                                       
Query: 121 gcccaaactataagtcacagtcaaaagataaaacagccttaggaaacatctagaaatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccaaactataagtcacagtcaaaagataaaacagccttaggaaacatctagaaatgct 380

                                                                       
Query: 181 tcctggattgaaaaaaaaaatgtggtgagggagcagttgatcctgcaaatgagagaagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctggattgaaaaaaaaaatgtggtgagggagcagttgatcctgcaaatgagagaagcc 440

                                                                       
Query: 241 aaagatccagatggaaatcaatctaggagctgagcttcattaccagagaaacgagaacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagatccagatggaaatcaatctaggagctgagcttcattaccagagaaacgagaacaa 500

                                                                       
Query: 301 acaaatgtagcctgggtttgtgggtggaggctacacaggtccttgatagcacttgaagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaatgtagcctgggtttgtgggtggaggctacacaggtccttgatagcacttgaagtt 560

                                                                       
Query: 361 caggtttatttggaaaattacaaatccaaaaacaaacaacaaaaacattaaaagcaacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggtttatttggaaaattacaaatccaaaaacaaacaacaaaaacattaaaagcaacaa 620

                                                                       
Query: 421 aaaa-cgtaataaggtgttgagggattttaacaagaaaccaactttcacttttgttcact 479
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaaacgtaataaggtgttgagggattttaacaagaaaccaactttcacttttgttcact 680

                                                                       
Query: 480 gcaatttattgttcacacaaatgtcatttaacaactaaacatttgtgcagacttgttata 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaatttattgttcacacaaatgtcatttaacaactaaacatttgtgcagacttgttata 740

                                                 
Query: 540 taatctaagcatctgcttttgcctaactgaaaatactt 577
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taatctaagcatctgcttttgcctaactgaaaatactt 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 978
Length adjustment: 10
Effective length of query: 567
Effective length of database: 968
Effective search space:   548856
Effective search space used:   548856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)