BAC Information

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BAC

Clone NameMSMg01-073B05
Chromosome4 (Build37)
Map Location 120,297,905 - 120,298,156
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063
Downstream geneCited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921, LOC666927
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073B05.T7 (MSMg01no073_b05.b1)MSMg01-073B05.TJ (MSMg01no073_b05.g1)
ACCAG296463AG296464
length703735
length of high quality
(start - end)
253 (63 - 315)106 (76 - 181)
definitionCHROMAT_FILE: MSMg01no073_b05.b1 PHD_FILE: MSMg01no073_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:02 2005CHROMAT_FILE: MSMg01no073_b05.g1 PHD_FILE: MSMg01no073_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGATCCGCGGAATTCT
GAGCCTCTCCTTCGTTGTTGCAGATTGTAAGCAATACAAAAGGCACTTAG
CTCACAGCATTCATGTGAGCATTAAAGTAATGACCACAGGTAAGCCAAGT
GTGGTGGCAAAGGACTATGATGCTTGGAGGATGTGGCTGGAGGACCTCCA
GGAGTCAAAGGTTATCCCTAGCTACAAATGTACTGAGGGCCATCCTGAGC
AACTAGGGACCTGTGGAAGACAAATAAATCCATGAAATGTTTACTTTTGT
GTCCAATACAGTAATCAGTCAATAGATGGTACTACTTCATTTTAGCGATT
TATGTATTGTTTTTATGTGTGCAGCCATTTTGTCTGCATGTATGTCTGTG
CATTAAGTGTTCATACTCTATGCCTGTGGATGCCATAATATGCCGTTGGA
TCCTCTGGAACTGGGTTTCCAGTGTGTGTAGATGCTGGGATTCAAACCTG
TTTCCTCTGAATTATTACCCTTTGCTTGTGACTCACGTTGAGTTATCTTT
TCAGCTCTGGTTGCTACTTTGTCCGTTTGCTGATAGTTTCCTCTATGTAA
CCCTATCTGGCCTGTACCCTTTTTTGTACTCTTAACTGTCTCCACCATCC
ATTTTAATCCCCTTGTTCTTGCCTCCTGATTGCTCAGATTTCCACATCCT
CTT
TTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATCTGTAATGGAATCCGCTGCCCTC
TTCTGGTGTGTCTGAAGACAGCACATGCATAAATAAATCTTTTTTAAAAG
AAGAGGAGGAGGAGAAGGAAGGAAGAAGAATAGAAGGAAGATGACGAAAA
GAAAGAAGAATAGAGGAGAATAATAATGGCTTATGGGCTACGGATACAGC
ACTGTCAGTAGAGTGCTTGCCTAGCATGCAACAAGCCCTTAGTTTGATCC
CTGTCACTGCATAAACTGCATGCTTGTAATCCCAGTACTTGGGAGGTACA
GCCAGGAGAATCATAACTTCTATGTCAGTCCTGCTTAGGTATTAAGCTCA
GAGCCTGCCTGCGATGGCTGGACGGATATACGAATATCTGAGTGTGTGTG
TGCGTGTGCCGCGCCGTCTCTCACATTCCCTCCCCACCCTCCTTTCTTCT
CTTTTTACATCCCTCCCTCTTTCTTTCTTCCCCCCTTACTCTCCTTCATA
TCTCTTCTTTTCCTATTTTCTCTCCCACTCCCACCTACTTCTTCCTACCC
CCCTATTTACTCCCATTATCCCCTCTTTTCTCCCTTCTCTTTTTCCTTTT
CCCCGTCTCCTTCCTCTTCCTTCCCTCTCTCTCCTCCCCACCCCTTTCCC
CCTTTCCCCCCTTTCTCCCTCTCCTTCCTCGCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_b05.b1 MSMg01no073_b05.b1 CHROMAT_FILE:
MSMg01no073_b05.b1 PHD_FILE: MSMg01no073_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:02 2005
         (253 letters)



>mm_chr4_120297705_120298357
          Length = 653

 Score =  466 bits (241), Expect = e-136
 Identities = 250/253 (98%), Gaps = 2/253 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgttgttgcagattgtaagcaatacaaaaggcacttagctcacagcattcatgtgagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgttgttgcagattgtaagcaatacaaaaggcacttagctcacagcattcatgtgagcat 260

                                                                       
Query: 61  taaagtaatgaccacaggtaagccaagtgtggtggcaaaggactatgatgcttggaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaagtaatgaccacaggtaagccaagtgtggtggcaaaggactatgatgcttggaggat 320

                                                                       
Query: 121 gtggctggaggacctccaggagtcaaaggttatccctagctacaaatgtactgagggcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggctggaggacctccaggagtcaaaggttatccctagctacaaatgtactgagggcca 380

                                                                       
Query: 181 tcctgagcaacta-gggacctgtggaagacaaataaatccatgaaatgtttacttttgtg 239
           ||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tcctgagcaac-atgggacctgtggaagacaaataaatccatgaaatgtctacttttgtg 439

                        
Query: 240 tccaatacagtaa 252
           |||||||||||||
Sbjct: 440 tccaatacagtaa 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)