BAC Information

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BAC

Clone NameMSMg01-073C18
Chromosome4 (Build37)
Map Location 27,937,204 - 27,937,452
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040691, Tpm3-rs2
Downstream geneLOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073C18.T7 (MSMg01no073_c18.b1)MSMg01-073C18.TJ (MSMg01no073_c18.g1)
ACCAG296537AG296538
length716715
length of high quality
(start - end)
610 (43 - 652)249 (68 - 316)
definitionCHROMAT_FILE: MSMg01no073_c18.b1 PHD_FILE: MSMg01no073_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:09 2005CHROMAT_FILE: MSMg01no073_c18.g1 PHD_FILE: MSMg01no073_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTCAGCCCTGAGCCCCATTTTTCAATGGGGTTATTTGATTTTCT
GAAGTCCACTTTCTTGAGTTCTTTATATATGTTGGATATTAGGCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTT
GTCTTACTGACATTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAG
GTCCCATTTGTCAATTCTCCATCTTACAGTACAAGCCATTGCTGTTCTAT
TCAGGAATTTTTCCCCAGTGCCCATATCTTCAAGGCTTTTCCCCACTTTC
TCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTTGCATTC
TTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTG
TCTTTCTTCCACTGGATGGCTTTAGCTCCCTTGTCGAAGATCAAGTGACC
ATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTA
CTTGTCTGTCTCTATACCAGTACCATGCAGTTATTATCACAATTGCTCTG
TAGTTAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGNTCTTTTATC
CTTGAGAAGACTTTTT
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAAAAAACACTATGAATCCAACATTTTTCTTAAACTTGTCA
TTTTATTGCCTCAACCTTGCAAATTCTCTAATTACTAGTATATACCACCA
TAATTGGTTAGACTTGAAGACTGTGACATGCAATAGTGTTTCTTAAGTAT
TTTTAAAATGCCAATGCACTCAACTGTCCTGATATCAGATACATCTACCT
AGTATGTTCTATATTAGAGTTCTCTCAAATGTTTCTACCTGGTGCCGTCT
GGGAATATTGTTTGTAGGTCNTTCTACAAATTGGATAGCTGTTTTTGAAC
TGGTGCTGCCAGCAACCTATGATTGTATAACATCACTCTGCCTTTTTTGA
CATGTGGTATTCTTCTTAAAACACAGAATCTACTTATACTTGATTAAATA
ATCACTCTATCCTAGTGTGACCTCATCTTCTCTGGTTACATTTGTAACTA
ACTAAATCTCAAAATCAAATTCTCTACCAGTCAAAATGACAAAGAAAACA
TATCATTGGCAAAAAAAAAAAAGTTCATGTAGACTAATTGCAAGAAGTGG
AGGACCTACAAATAAACTCTGCACAGCACTGTGAACATATTTTTTTTAAG
GGTGTCTTTAATTCAGTGTTAAAAAAGACAGCCCATTCCATAAATGGTGT
TGGCAAAAAATACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_c18.g1 MSMg01no073_c18.g1 CHROMAT_FILE:
MSMg01no073_c18.g1 PHD_FILE: MSMg01no073_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:09 2005
         (249 letters)



>mm_chr4_27937004_27937652
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatgaatccaacatttttcttaaacttgtcattttattgcctcaaccttgcaaattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 actatgaatccaacatttttcttaaacttgtcattttattgcctcaaccttgcaaattct 390

                                                                       
Query: 61  ctaattactagtatataccaccataattggttagacttgaagactgtgacatgcaatagt 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 389 ctaattactagtatataccaccataactggttagacttgaagactgtgacatgcaatagt 330

                                                                       
Query: 121 gtttcttaagtatttttaaaatgccaatgcactcaactgtcctgatatcagatacatcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtttcttaagtatttttaaaatgccaatgcactcaactgtcctgatatcagatacatcta 270

                                                                       
Query: 181 cctagtatgttctatattagagttctctcaaatgtttctacctggtgccgtctgggaata 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 269 cctagtatgttctatattagagtactctcaaatgtttctacctggtgccgtctgggaata 210

                    
Query: 241 ttgtttgta 249
           |||||||||
Sbjct: 209 ttgtttgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)