BAC Information

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BAC

Clone NameMSMg01-073D15
Chromosome4 (Build37)
Map Location 110,755,332 - 110,755,569
singlet/doubletsinglet
Overlap genenone
Upstream geneElavl4
Downstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073D15.T7 (MSMg01no073_d15.b1)MSMg01-073D15.TJ (MSMg01no073_d15.g1)
ACCAG296577AG296578
length705708
length of high quality
(start - end)
387 (39 - 425)238 (78 - 315)
definitionCHROMAT_FILE: MSMg01no073_d15.b1 PHD_FILE: MSMg01no073_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:13 2005CHROMAT_FILE: MSMg01no073_d15.g1 PHD_FILE: MSMg01no073_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TTTTTTTCTTTTTCTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCT
GGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGC
CTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACCACCTGGC
GAGAATTCTTTTTTTTTTTTAATTTTTTATTAGGTATTTTCCTCATTTAC
ATTTCCAATGCTATCCCAAAAGTCCCCCGTAACCTCTCCCCCACCCCCAC
TCCTCTACCCACCCATTCCTACTTCTTGGCCCTGGTGTTCCCCTATACTG
AGGCATATAAAGTTTTCACTACCAATGGGCCTCTCTTTCCACTGATGGCC
TACTAGGCCACCTTCTGATACATATGCAGCTAGAGACTTGACCTCTGGGG
GGTACTGGTCAGTTTGTATTGCTGTTCCACCTATAGGATTGTAGATCCCT
TTAGCTCCTTGGGTACTTTCTCTAGCTCTTCCATTGGGGGCCCTGCGACC
CTTCCAATAGCTGACTGTGAGCACCCATTTCTGAGTTTGCTAGGCCCCGG
CACATTCTCACCATATACATTTACTTTTGTCTTCTTTCACTCCAATCTTG
TTATTGTACGTATTGGTGTCCCTCCTTTGAAGGCTGATTTTGCCATGTAC
CTCCC
ATTGAAGTGGGAGCCCTGGCGGCCGCCTGTTTCCTTACTTGAGGNGAACN
ANAGAAGGTTTCGNGATTAACATTTCNAACTTTTTATCAGATAGATCTCT
AAGAAGCCCTCCAGTGGCCAGCTCTCAGGGGCCTCATGAATAAACCCTTC
ATGGAGTCTTTCTGTTCACATGCAGCATACTTAAGACAGCTCTCTGGGAC
TGTTTCTTGAGAATATTATTCAACAATTTTATTTTCATTGTACTGTCTCC
TTCAATAAAAGGTTGTACAAAGGTCATTCCTTCTTTCCACCTGACAGGAC
TTGCTTATATCAGACTACATGGTTTATGCAAGGTAGCTATACTTTTACTG
TCGATGTCTTATACACCCCACCAAATAAATATATAATGTCTGCTCAGGGC
CGTATAAAAGCACATCCATTTAAAATAAAAAATGCACATCAGCCAAATAT
TTAATACTACTTTGGGTAAGACGATCTGGCCTGGTGATTGACATTTATAT
TGTTGGCACTCAGCCCACTTTCCATAAAGAAATGTGTTCCCATCCTGTTA
CCCCATGGCTACCTTTACCTGAAAGAAAAGAATTTACCAAGCAGGCCCGC
CTGTGTACGCGATGGCCAAACAATTTTCAGCTCTATTTGTAGGCGCGGGC
TTACTCTTCTTTTTTTTTTAAAAATAGATTCTTGTAAAACCTGGGCTGCC
TTTCACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_d15.g1 MSMg01no073_d15.g1 CHROMAT_FILE:
MSMg01no073_d15.g1 PHD_FILE: MSMg01no073_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:13 2005
         (238 letters)



>mm_chr4_110755132_110755769
          Length = 638

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactttttatcagatagatctctaagaagccctccagtggccagctctcaggggcctcat 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 aactttttatcagatagatctctaagaagccctccagtggcaagctctcaggggcctcat 260

                                                                       
Query: 61  gaataaacccttcatggagtctttctgttcacatgcagcatacttaagacagctctctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaataaacccttcatggagtctttctgttcacatgcagcatacttaagacagctctctgg 320

                                                                       
Query: 121 gactgtttcttgagaatattattcaacaattttattttcattgtactgtctccttcaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 gactgtttcttgagaatattattcaacaattttattttcattgtactgtctccatcaata 380

                                                                     
Query: 181 aaaggttgtacaaaggtcattccttctttccacctgacaggacttgcttatatcagac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaggttgtacaaaggtcattccttctttccacctgacaggacttgcttatatcagac 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)