Query= MSMg01no073_e13.b1 MSMg01no073_e13.b1 CHROMAT_FILE:
MSMg01no073_e13.b1 PHD_FILE: MSMg01no073_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:18 2005
(291 letters)
>mm_chr4_119737288_119737978
Length = 691
Score = 505 bits (261), Expect = e-147
Identities = 282/289 (97%)
Strand = Plus / Minus
Query: 1 gtcagggaaggcaaggacaggtgatggccactctccagacaggagtttttcccagaagaa 60
|||||||||||||||||||||||||||||||||||||||||| || |||| |||||||
Sbjct: 489 gtcagggaaggcaaggacaggtgatggccactctccagacagaaggttttaagagaagaa 430
Query: 61 cacagtcagctaaaatggcagttggcaaaccagactggagcttcttacctgcgctgcagg 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cacagccagctaaaatggcagttggcaaaccagactggagcttcttacctgcgctgcagg 370
Query: 121 caccacttccgatgaccaaaactgaagcgctgctctctctggaagccagcgttcatgtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 caccacttccgatgaccaaaactgaagcgctgctctctctggaagccagcgttcatgtcc 310
Query: 181 actccggccgcaaagcctctgcttacacactgcttctccctgaggaaggggtagcgtgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 actccggccgcaaagcctctgcttacacactgcttctccctgaggaaggggtagcgtgcc 250
Query: 241 tggccagcggttctccagagtcttccatgagctacttcgaggcagcttg 289
|||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tggccagcggctctccagagtcttccatgagctacttcgaggcagcttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no073_e13.g1 MSMg01no073_e13.g1 CHROMAT_FILE:
MSMg01no073_e13.g1 PHD_FILE: MSMg01no073_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:18 2005
(564 letters)
>mm_chr4_119573060_119574023
Length = 964
Score = 1013 bits (524), Expect = 0.0
Identities = 557/572 (97%), Gaps = 8/572 (1%)
Strand = Plus / Plus
Query: 1 tttgttcagctctaagccccattttttaatggggttatttgattttctggagcccacctt 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgttcagctctgagccccattttttaatggggttatttgattttctggagcccacctt 260
Query: 61 cttgagttctttatatatattggatattagtcccctatctgatttaggataggtaaagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttatatatattggatattagtcccctatctgatttaggataggtaaagat 320
Query: 121 cctttcccaatctgttggtggtctttttgtcttattgacggtgtcttttgccttgcagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttcccaatctgttggtggtctttttgtcttattgacggtgtcttttgccttgcagaa 380
Query: 181 gctttgcaactttatgaggtcccatttattgattctcgatcttactgcacaagccattgc 240
||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||
Sbjct: 381 gctttgcaactttatgaggtcccatttatcgattcttgatctttctgcacaagccattgc 440
Query: 241 tgttctattctggaacttttcccctgtacccatatctttgaggctttttcctactttctc 300
|||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 441 tgttctattcaggaacttttcccctgtacccatatcttcgaggcttttccctactttctc 500
Query: 301 ctctataagtttcagtgtctgctttgatttttaaaaacatatcttttgctgtctacacct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctataagtttcagtgtctgctttgatttttaaaaacatatcttttgctgtctacacct 560
Query: 361 ttaggttctctatctattgtttcaaccatctgcagatctaaaatatttttaaaactattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaggttctctatctattgtttcaaccatctgcagatctaaaatatttttaaaactattg 620
Query: 421 tgaggtatctggattgaatatgatgtcttttctctagtcattattccttagccaggtcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaggtatctggattgaatatgatgtcttttctctagtcattattccttagccaggtcat 680
Query: 481 atacat------catatatatgtatatgtgtatgtatacatatacatatatatgtataca 534
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atacatatacatcatatatatgtatatgtgtatgtatacatatacatatatatgtataca 740
Query: 535 ca--tatatatgcatacacatagacatataca 564
|| ||||||||||||||||||||||||||||
Sbjct: 741 cacatatatatgcatacacatagacatataca 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
