Query= MSMg01no073_o11.b1 MSMg01no073_o11.b1 CHROMAT_FILE:
MSMg01no073_o11.b1 PHD_FILE: MSMg01no073_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:07 2005
(227 letters)
>mm_chr4_65733645_65734271
Length = 627
Score = 402 bits (208), Expect = e-117
Identities = 223/228 (97%), Gaps = 2/228 (0%)
Strand = Plus / Minus
Query: 1 aattatttttgcctgtaagacctcttgtgaagaaagcttgtattttcacatgtaaaatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aattatttttgcctgtaagacctcttgtgaagaaagcttgtattttcacatgtaaaatgc 368
Query: 61 cctgtataacactctctggcctgtggtatgtgtctaggataacaccatggtgactccatc 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 367 cctgtataacactctctggcctgtggtatgtgtctaggataacaccttggtgactccatc 308
Query: 121 cagaccattaagaaaagagaatcacgagctctagggatatgggcagaagtcataagttct 180
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 307 cagaccattaagaaaagagaatcatgagctctagagatatgggcagaagtcataagttct 248
Query: 181 gagagctggatcacctcttctgttcttttttca-gtctctgactgagt 227
|||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 247 gagagctggatcacctcttctgttcttttt-caagtctctgactgagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space: 134724
Effective search space used: 134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no073_o11.g1 MSMg01no073_o11.g1 CHROMAT_FILE:
MSMg01no073_o11.g1 PHD_FILE: MSMg01no073_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:07 2005
(622 letters)
>mm_chr4_65604918_65605940
Length = 1023
Score = 1137 bits (588), Expect = 0.0
Identities = 614/623 (98%), Gaps = 1/623 (0%)
Strand = Plus / Plus
Query: 1 tctgctaaagcactcttcctacatacactcccaactgattctccaaggctgagctaaaag 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tctgctaaagcactcttcctacatacactccccactgattctccaaggctgagctaaaag 260
Query: 61 gtcatctttctctcaatacctctcatctcctgaaacacccttctccaatccatttctcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcatctttctctcaatacctctcatctcctgaaacacccttctccaatccatttctcac 320
Query: 121 tgttttccaggaaggaagcacttggttaatgcattgttcttgatttatggcacactacat 180
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 tgttctccaggaaggaagcacttggttaatgtattgttcttgatttatggcacactacat 380
Query: 181 tttttataatagctatattatcagattcctttttatccttgtaagaatgtaaaatccaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttataatagctatattatcagattcctttttatccttgtaagaatgtaaaatccaca 440
Query: 241 aagaaatgaatactgtccaatttttctgtgattttcccatagctcctaacacatagactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaaatgaatactgtccaatttttctgtgattttcccatagctcctaacacatagactt 500
Query: 301 atgagtgtggaattaagaaaatcttgcttgaatggaatctaacgaattgaactaaatttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgagtgtggaattaagaaaatcttgcttgaatggaatctaacgaattgaactaaatttt 560
Query: 361 tcaaagtgggcttgaatcaaacctcatgaaaatatattaggctctcatttttgactcctc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaaagtgggcttgaatcaaacctcatgaaaatatattaggctctcatttttgactcctc 620
Query: 421 actagaagatattcttatcaatttatgcctttagtagtttataagagtaagacactttgc 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 actagaagatattcttatcaatttatgtctttagtagtttataagagtaagacactttgc 680
Query: 481 tgagggagggaaggatacagagatgaactaggcaaaggctgtaaacttatgaatttaagt 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 tgagggagggaaggatacagagatgaactaggcaaaagctgtaaacttatgaatttaagt 740
Query: 541 tctaataggtgggacaaatttt-anacagcaactctgagatgtaaccttattttaataaa 599
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 741 tctaataggtgggacaaatttttaaacagcaactctgagatgtaaccttattttaataaa 800
Query: 600 caaagaaatctaattattacaga 622
||||||| |||||||||||||||
Sbjct: 801 caaagaattctaattattacaga 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1023
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1013
Effective search space: 619956
Effective search space used: 619956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
