BAC Information

Click to search

BAC

Clone NameMSMg01-074F12
Chromosome4 (Build37)
Map Location 86,034,442 - 86,034,914
singlet/doubletsinglet
Overlap geneAdamtsl1
Upstream geneSh3gl2, A930009N24, LOC668052
Downstream gene4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074F12.T7 (MSMg01no074_f12.b1)MSMg01-074F12.TJ (MSMg01no074_f12.g1)
ACCAG297422AG297423
length729687
length of high quality
(start - end)
200 (47 - 246)472 (55 - 526)
definitionCHROMAT_FILE: MSMg01no074_f12.b1 PHD_FILE: MSMg01no074_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:41 2005CHROMAT_FILE: MSMg01no074_f12.g1 PHD_FILE: MSMg01no074_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATTGTCATCAATTCATCTAAACAGCATTAATTCATGAAAGTCC
ATTTTCATGTTGATCTGCAGGAAATTTGCCCCATAGGGTGGGCTGATGCC
CAGGAATCAGTAGGCTATGTAATAGTGGCATGAAAAACATCAGCAGCAAG
AAGCAATCTAGGGACAAAGTCCCTAGGGCTGTGCCTTTCAGAGTGCACCC
ATTGCAGCCTTGCAAAAACTGTGTGCCATCTCCAGAAAATTTCTTTGTTT
GCCATACCTCTCCCCCGTGTTTTTTTCGGGCCAGTTTTTTTTTTGAAGTT
GATTGCCGGGGTTTTTCCCCCCCCCCCCCCCGTTTTTGTCAATGAACAGT
GTGTGCTCATGACAGCCTGTAACTGGGGGTTTTCTACGCCTGTCCCAGCT
CCTGAATAATGACCCAAAGACTATATGTACTTCATAAGCTTTTGTCCTTA
TAGTTACAGGTAACTTTTTCTACCGGTCCTACCTCCGCCTATCCCGACTA
TACTAACTCTTCTCTTCTTGTCTCATGGGCTGGCTTAATTACCTCTGCCT
TCCTTTCTCAGTCCGGTTTTTTTTCCTCTGTGACCTGCCACCCCTTATCA
CACCTTTTCTTCCCCCCTCTCTTCTTTTCTCTGCTTCCTTCTTCTTCCCC
CCCCACCTTCTTTTATGCTTTTGTTATTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCTCTCCTTGGTGAGCCAACCCTCTGAAACATTGGGCAAAAATCC
AGGGCTGGACAGGATTTATGGATGGGTGACTGCCTGCAGGTGGGAGGGAG
GCAGCAGTGGGGGGTGGCCAACAGGAAATCACTAAATTGCCTACAGAATC
CAGACTCACCAGTGGAAACTTGGCTGACTTTCCACACGAGGTGAGTGCGG
CTCTCAGTCTGGGCTCTATGGTTTGTCTGGATTCCAATATGGCCCCTCTT
GGGCTGATGCCATGGTCCAGACCCTCTCCTTCAGGGGTACTCACTGAACT
CTGAGAAACGGGTAGCAATGAACAACCCTTTCTGTGTCTCCTCCCCACCA
CGAGCCCTCTAACCTCTTACTCTGAAACAGCAAGAATCAGCTTTTAAGGG
CAAAGCTATAGTGCTTGCAGGCCAGAGGCCCGAAACTCTGTCTAGGCCAT
CTCTCCCTCTAGAGAGTCTATAGCCAACCCAGATAGAGTTCCCATGGCAA
AACCTCCCTACCATCGAACACTGACGACCCCGCTAATGCCTACACTACCT
GTATCCAGATTAGCACAGTCTTTGGCTAACATCTGAAGCTCTGACCTTCC
ACCTCCGGAAGCCTGGGTAAGACTGATTGTGTCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_f12.g1 MSMg01no074_f12.g1 CHROMAT_FILE:
MSMg01no074_f12.g1 PHD_FILE: MSMg01no074_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:41 2005
         (472 letters)



>mm_chr4_86034242_86035114
          Length = 873

 Score =  884 bits (457), Expect = 0.0
 Identities = 469/473 (99%), Gaps = 1/473 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgctctccttggtgag-ccaaccctctgaaacattgggcaaaaatccagggctggacagg 59
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgctctccttggtgagtccaaccctctgaaacattgggcaaaaatccagggctggacagg 260

                                                                       
Query: 60  atttatggatgggtgactgcctgcaggtgggagggaggcagcagtggggggtggccaaca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttatggatgggtgactgcctgcaggtgggagggaggcagcagtggggggtggccaaca 320

                                                                       
Query: 120 ggaaatcactaaattgcctacagaatccagactcaccagtggaaacttggctgactttcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaatcactaaattgcctacagaatccagactcaccagtggaaacttggctgactttcc 380

                                                                       
Query: 180 acacgaggtgagtgcggctctcagtctgggctctatggtttgtctggattccaatatggc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacgaggtgagtgcggctctcagtctgggctctatggtttgtctggattccaatatggc 440

                                                                       
Query: 240 ccctcttgggctgatgccatggtccagaccctctccttcaggggtactcactgaactctg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctcttgggctgatgccatggtccagaccctctccttcaggggtactcactgaactctg 500

                                                                       
Query: 300 agaaacgggtagcaatgaacaaccctttctgtgtctcctccccaccacgagccctctaac 359
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaacgggtagcaatgaacaaccgtttctgtgtctcctccccaccacgagccctctaac 560

                                                                       
Query: 360 ctcttactctgaaacagcaagaatcagcttttaagggcaaagctatagtgcttgcaggcc 419
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 ctcttactctgaaacagcaagaatcagcttttaagggcaaggctatagtgcttgcaggcc 620

                                                                
Query: 420 agaggcccgaaactctgtctaggccatctctccctctagagagtctatagcca 472
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaggccggaaactctgtctaggccatctctccctctagagagtctatagcca 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 873
Length adjustment: 10
Effective length of query: 462
Effective length of database: 863
Effective search space:   398706
Effective search space used:   398706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)