BAC Information

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BAC

Clone NameMSMg01-074I20
Chromosome4 (Build37)
Map Location 21,629,314 - 21,629,626
singlet/doubletsinglet
Overlap genenone
Upstream geneE130310K16Rik, Prdm13
Downstream geneCcnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379, Fbxl4, Pou3f2, LOC664911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074I20.T7 (MSMg01no074_i20.b1)MSMg01-074I20.TJ (MSMg01no074_i20.g1)
ACCAG297581AG297582
length700699
length of high quality
(start - end)
306 (44 - 349)276 (75 - 350)
definitionCHROMAT_FILE: MSMg01no074_i20.b1 PHD_FILE: MSMg01no074_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:57 2005CHROMAT_FILE: MSMg01no074_i20.g1 PHD_FILE: MSMg01no074_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTATGTACACCATCTGGCCTAGAACTCATGGAAATCTGCCTGCCTC
TGCCTCCTAGTGTTGGTACTAAAGGCACTTAACACCATGAACCAGCTCCT
TCAAGTAACAAGGTTCTATGAAGCAGAATAAAGTAAGGTCAATCCTGAGG
AAGGTGGGTTTTATGTGGAATGATTTTAAAGGGTCTCTCTTACAAGTAGT
ATTCGACTAGAAAGAAGTAAGGGAGACAGTCATGTAAAATGTCTGGGTTT
GTATAAATGAATTGTGCTGGATAGTTTTATGACAAGCTAGTTATCTGAGA
AGAGATATTTTCTACCAACATAACATCTCTCTAATACTGGGTTGTATGTA
TGCAAGCCTGTAACTAGTGTTGATAGAGGAGGGTCCAGCCCATTGTGAGT
GGTGCCACCCCTGAGATAGTGGCCTTGGTTTCTATAAGATATGAGACTTA
TAACGTTATGAGGAGCCAGCCAGTATGCAAATTTCCTTCTTGTTCTCTGC
CCCATTTTTTGCTTCCAGATTCCTGCTCTGTCTTCTAACTTCCTGTCTTG
ACACCCTCCCACATGAATTTTTTTTTACGATGTCTTTGCCCCCATTCCGT
GCCCCTTTTTCCCCCTCTTTTTTCCCGCCCCTCGGCCCTGTTGTTCTGCC

TCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGAAAAAGTCTGTGTCTGCAAAGA
TTGATTGGAGCTTCAGTGATCGCGGAGAAGTTGGAATTTTACAAGTCCAG
AGGCTAATTACCCAATCTGGCCCTAGCTTTACCCACGAATTGCCAGTCTT
TGCCAACCTCCCCATATTAGAGCTAAATCCTGTGACTAATAGATTAAAAA
CCTTTTAGAACTTTTAAAAAAATGATTTATTTATTTTTATTTTATGTGTA
TTGGTGTTTTGCCTGCGTGCATGTCTGTGTGAGGGTGTCAAATCACTTGT
TGCTGGACTATTTATACTCCCCCCCTGCCATGTGGCTACTAGGAATTGAA
CTCTGGTACCAGCGCTATTAACCACTGATCAAGTCTTTGGAACTTTTTAA
CTTATCTGACTCCTAGCTTCCACCTACCCTATAGCTAACACTGCTATCAT
ATAGTATCTGCAGCGATGTATAAATGAGTCCCCTTCTTGCTGCAGCTTTC
TGTGATGTACACACCAGCGTTTCTTAAATCCTGCTTCGCTTTATGACTGT
CTGCCTCTCAAACTCTATACCTGTCCCGCATCCTTTTTCCCGCCCCTCGG
CGAATCTTGTATTCCCTGTGTTCCCCGTCCTCTGCCCCCTCCGCCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_i20.b1 MSMg01no074_i20.b1 CHROMAT_FILE:
MSMg01no074_i20.b1 PHD_FILE: MSMg01no074_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:57 2005
         (306 letters)



>mm_chr4_21629124_21629826
          Length = 703

 Score =  468 bits (242), Expect = e-136
 Identities = 291/316 (92%), Gaps = 16/316 (5%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactatgtacaccatctggcctagaactcatggaaatctgcctgcctctgcctc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ggaattcactatgtagaccatctggcctagaactcatggaaatctgcctgcctctgcctc 250

                                                                       
Query: 64  ctagtgttggtactaaaggcacttaacaccatgaaccagctccttcaagtaacaaggttc 123
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctagtgttggtattaaaggcacttaacaccatgaaccagctccttcaagtaacaaggttc 310

                                                                       
Query: 124 tatgaagcagaataaagtaag---g----------tcaatcctgaggaaggtgggtttta 170
           ||||||||||||||||||||    |          |||||||||||||||||||||||||
Sbjct: 311 tatgaagcagaataaagtaataaagaataaacatttcaatcctgaggaaggtgggtttta 370

                                                                       
Query: 171 tgtggaatgattttaaagggtctctcttacaagtagtattcgactagaaagaagtaaggg 230
           ||||||||| ||||||||||||||||| ||   |||||||||||||||||||||||||||
Sbjct: 371 tgtggaatggttttaaagggtctctctgac---tagtattcgactagaaagaagtaaggg 427

                                                                       
Query: 231 agacagtcatgtaaaatgtctgggtttgtataaatgaattgtgctggatagttttatgac 290
           |||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 428 agacagtcatataaaatatctgggtttgtataaatggattgtgctggatagttttatgac 487

                           
Query: 291 aagctagttatctgag 306
           |||||||| |||||||
Sbjct: 488 aagctagtcatctgag 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 703
Length adjustment: 9
Effective length of query: 297
Effective length of database: 694
Effective search space:   206118
Effective search space used:   206118
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)