BAC Information

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BAC

Clone NameMSMg01-075I21
Chromosome4 (Build37)
Map Location 52,950,930 - 52,951,320
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1
Downstream geneOlfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075I21.T7 (MSMg01no075_i21.b1)MSMg01-075I21.TJ (MSMg01no075_i21.g1)
ACCAG298342AG298343
length718712
length of high quality
(start - end)
477 (78 - 554)578 (75 - 652)
definitionCHROMAT_FILE: MSMg01no075_i21.b1 PHD_FILE: MSMg01no075_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:14 2005CHROMAT_FILE: MSMg01no075_i21.g1 PHD_FILE: MSMg01no075_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGG
AATTCTCACCTGAGGAATCCCGAATGGCAGAGAAGCACTTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCGGAGTATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTANAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
AAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCC
AGGATACCCCAGATATAAGATATAACTTTGCTAAACACCATGATACTCAA
GAAGAATGAAGACCTGAG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCGAGTAAGGATTCTGGAGGCAAGAG
CCAGCACCCCTGATTTCTGGGTGATTGCAGTGGATATTTTCTGATGATCA
CTCAGTGAGAAAGGTCATGAAACTTTCCTGTTGGTGAATGTCTTTGTAAT
TGCAGGCTTTCCTTTGGATTCCTTCAGATTAGACCTGGGTAGCTATCAAT
TAAAAGATGCTTGCATTAGAAAATGAGAAAATAAGCCATAGGCTAGAAAG
CAATATAGATAAATCATAAATATGACTAAAGACTCAGCCATCTATCTATC
TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCTATCTCTCTGTGTGTGAGTGTGTGTATGTGTGTGTG
TATGAAGAACTATGAAAACTCAACAGCAAAAAAAATTTGAATAGGAAATA
GGAAAAAGATACAAACTTTTTACAAAAAATATATATACACAGGGCAAAAA
AGAATAAGGAAATTGCTTATTGTGGATTTTATTATAAATAAATTCCTTCA
CGAGATGTCTCTATATACCCATTGAAATGAATCAGAAGCCACTGCTAGCA
ATACTGAGTGTTGATGGAAGTCAGAGAAACTGCCACTTTTACATGCTGTT
GCTTGGAATGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_i21.g1 MSMg01no075_i21.g1 CHROMAT_FILE:
MSMg01no075_i21.g1 PHD_FILE: MSMg01no075_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:14 2005
         (578 letters)



>mm_chr4_52950928_52951905
          Length = 978

 Score =  634 bits (328), Expect = 0.0
 Identities = 381/412 (92%), Gaps = 25/412 (6%)
 Strand = Plus / Minus

                                                                       
Query: 3   gagtaaggattctggaggcaagagccagcacccctgatttctgggtgattgcagtggata 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 393 gagtaaggattctggaggcaagagccagcacccctgatttctgggtgattgcaatggata 334

                                                                       
Query: 63  ttttctgatgatcactcagtgagaaaggtcatgaaactttcctgttggtgaatgtctttg 122
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 333 ttttctgatgatcactcagtgagaaaggtcattaaactttcctgttggtgaatgtctttg 274

                                                                       
Query: 123 taattgcaggctttcctttggattccttcagattagacctgggtagctatcaattaaaag 182
           |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 273 taattgcaggctttcctttggattccttcagaatagacccgggtagctatcaattaaaag 214

                                                                       
Query: 183 atgcttgcattagaaaatgagaaaataagccataggctagaaagcaatatagataaatca 242
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 213 atgcttgcattagaaaatgagaaaataagccataggctag-aagcaatatagataaatca 155

                                                                       
Query: 243 taaatatgactaaagactcagccatctatctatctatctatctatctatctatctatcta 302
           |||||||||| |||||||    ||||||||||||||||||||||||||||||||||||||
Sbjct: 154 taaatatgacaaaagact----catctatctatctatctatctatctatctatctatcta 99

                                                                       
Query: 303 tctatctatctatctatctatctatctatctatctatctatctctctgtgtgtgagtgtg 362
           ||||||||||||||||             |   |||||||||||| ||||||||||||||
Sbjct: 98  tctatctatctatcta-------------c---ctatctatctctgtgtgtgtgagtgtg 55

                                                               
Query: 363 tgta----tgtgtgtgtgtatgaagaactatgaaaactcaacagcaaaaaaa 410
           ||||    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54  tgtatgtgtgtgtgtgtgtatgaagaactatgaaaactcaacagcaaaaaaa 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)