Query= MSMg01no076_i10.b1 MSMg01no076_i10.b1 CHROMAT_FILE:
MSMg01no076_i10.b1 PHD_FILE: MSMg01no076_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:32 2005
(220 letters)
>mm_chr4_128865652_128866271
Length = 620
Score = 383 bits (198), Expect = e-111
Identities = 212/218 (97%), Gaps = 4/218 (1%)
Strand = Plus / Plus
Query: 5 gaattcccacacaggcccaggcagcagatttttctaaactgaagcaacaggtttctttta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccacacaggcccaggcagcagatttttctaaactgaagcaacaggtttctttta 264
Query: 65 caagaatagtctattaaagcctggggctcttaacaaccacggggggg--ggggggggacg 122
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 265 caagaatagtctattaaagcctggggctcttaacaaccacgggggggtgggggggggagg 324
Query: 123 acacaaaaaacaaaaaatgagggtagccggtgaactccgtcctcatttggtggccctctg 182
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 aca--aaaaacaaaaaatgagggcagccggtgaactccgtcctcatttggtggccctctg 382
Query: 183 aagaagggctcaccttaggtgtctgcagcattccctgc 220
||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aagaagggctcaccttaggtgtctgcagcattccctgc 420
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space: 128921
Effective search space used: 128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no076_i10.g1 MSMg01no076_i10.g1 CHROMAT_FILE:
MSMg01no076_i10.g1 PHD_FILE: MSMg01no076_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:32 2005
(289 letters)
>mm_chr4_129010482_129011170
Length = 689
Score = 534 bits (276), Expect = e-156
Identities = 287/292 (98%), Gaps = 3/292 (1%)
Strand = Plus / Minus
Query: 1 tttggaaactcaagagttaagatacgtgcagaattcaattatgaggctgatggggttcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tttggaaactcaagagttaagatacgtgcagaattcaattatgaggctgatggggttcag 343
Query: 61 caggtaatagaaatttggagtaaagcgttgttttggtttgagggctaggaattgaacctt 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 342 caggtaatagaaatttggagtaaagagttgttttggtttgagggctaggaattgaacctt 283
Query: 121 gtgcatggtaaggaaggcagtaccatctgcaatacatctctactgtcatggaaagttcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gtgcatggtaaggaaggcagtaccatctgcaatacatctctactgtcatggaaagttcat 223
Query: 181 gtgcattttactagtaactt---aatgaggctgctgggctggagaggtggctcagcggtt 237
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 222 gtgcattttactagtaacttaagaatgaggctgctgggctggagaggtggctcagcggtt 163
Query: 238 aagagcactggttgatcttccaaaggtcctgagttcaaatcccagcaaccac 289
||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 aagagcactggctgatcttccaaaggtcctgagttcaaatcccagcaaccac 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
