Query= MSMg01no076_o11.b1 MSMg01no076_o11.b1 CHROMAT_FILE:
MSMg01no076_o11.b1 PHD_FILE: MSMg01no076_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:03 2005
(433 letters)
>mm_chr4_39559570_39560403
Length = 834
Score = 785 bits (406), Expect = 0.0
Identities = 421/426 (98%), Gaps = 1/426 (0%)
Strand = Plus / Plus
Query: 9 gaattcttcccttcccctc-atgctggataatagtcttgagacacagatactgctggtgt 67
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattcttcccttcagttcgatgctggataatagtcttgagacacagatactgctggtgt 268
Query: 68 tgcccaaactgttttgtttctatagcaactatgaagacatggtttcatttacaaacttgc 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgcccaaactgttttgtttctatagcaactatgaagacatggtttcatttacaaacttgc 328
Query: 128 cagtctcaattcaaatatctaaattcaaataactattaaaaaaacagcctatcactgttg 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cagtctcaattcaaatatctaaattcaaataactattaaaaaaacagcctatcactgttg 388
Query: 188 gtccctcccctctcagccctcccttttgtatcgttaagttttgatgttcatagtttggta 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gtccctcccctctcagccctcccttttgtatcgttaagttttgatgttcatagtttggta 448
Query: 248 agctctaccctcctcaattgtcttctttacttcctcttactttgtagcatccacgaggaa 307
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 449 agctctaccctcctcaattgtcttccttacttcctcttactttgtagcatccacgaggaa 508
Query: 308 tcaaatctatgcatagcttgctgaactgaggtttacattttcaatttggaagagatttct 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tcaaatctatgcatagcttgctgaactgaggtttacattttcaatttggaagagatttct 568
Query: 368 ttgtcatttcctcaacagattgattctgttactacaaataggacagatctacacttgaac 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttgtcatttcctcaacagattgattctgttactacaaataggacagatctacacttgaac 628
Query: 428 atctca 433
||||||
Sbjct: 629 atctca 634
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 834
Length adjustment: 9
Effective length of query: 424
Effective length of database: 825
Effective search space: 349800
Effective search space used: 349800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no076_o11.g1 MSMg01no076_o11.g1 CHROMAT_FILE:
MSMg01no076_o11.g1 PHD_FILE: MSMg01no076_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:03 2005
(436 letters)
>mm_chr4_39624989_39625824
Length = 836
Score = 812 bits (420), Expect = 0.0
Identities = 435/446 (97%), Gaps = 10/446 (2%)
Strand = Plus / Minus
Query: 1 tctagactttcagcccattttacttcttgaactcaacagataataaaaaatggaaaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tctagactttcagcccattttacttcttgaactcaacagataataaaaaatggaaaagga 669
Query: 61 aaaaaat----------aaaaaaaataaaaatgtactatttcccatgtactgttgcagat 110
||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aaaaaataaaaaaaataaaaaaaaataaaaatgtactatttcccatgtactgttgcagat 609
Query: 111 cttcctagtattgttggtggaggaaagggtcacatgcttatgttacaccaagcagattag 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cttcctagtattgttggtggaggaaagggtcacatgcttatgttacaccaagcagattag 549
Query: 171 cactggtttactttagaacctagcatagggcgcaccttcatcatggttgtaaagactcaa 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cactggtttactttagaacctagcatagggcgcaccttcatcatggttgtaaagactcaa 489
Query: 231 aatacacatgcatcaccatcgttctccagttccatctagcttagaaaactctacagctgg 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aatacacatgcatcaccatcgttctccagttccatctagcttagaaaactctacagctgg 429
Query: 291 atgttttcacttaatcccatcctacagttgacattgagatatggggcacaatgctctcta 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atgttttcacttaatcccatcctacagttgacattgagatatggggcacaatgctctcta 369
Query: 351 atggctcatcttcaagttactaacagtatttaggtttccaagttacaggtgaaatgagag 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 atggctcatcttcaagttactaacagtatttaggtttccaagttacaggtgaaatgagag 309
Query: 411 ccagaatgcgtgccagtaggagcaga 436
|||||||| |||||||||||||||||
Sbjct: 308 ccagaatgtgtgccagtaggagcaga 283
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
