Query= MSMg01no078_c21.b1 MSMg01no078_c21.b1 CHROMAT_FILE:
MSMg01no078_c21.b1 PHD_FILE: MSMg01no078_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:25 2005
(465 letters)
>mm_chr4_77739037_77739901
Length = 865
Score = 859 bits (444), Expect = 0.0
Identities = 456/460 (99%)
Strand = Plus / Minus
Query: 6 gaattcacattccaactcggctttcatgaaaagcacatatccttaaccaccaccaccata 65
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gaattcacattccaacttggctttcatgaaaagcacatatccttaaccaccaccaccata 555
Query: 66 gtgaggtgaggatactgtataagaccaccgcaatgaggcaaggacattgtataacataca 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gtgaggtgaggatactgtataagaccaccgcaatgaggcaaggacattgtataacataca 495
Query: 126 ctagcatgtgagggttcagtggaggaaaacacattgcttacagtttacactgtcgttgtc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 494 ctagcatgtgagggttcagtggaggaaaacacattgcttacagtttacactgttgttgtc 435
Query: 186 aagtcaatagaaaatgcatcaaagaagctgatttaattcatgacctttaacaacgtttcc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 434 aagtcaatagaaaatgcatcaaagaagctgatttaattcatgacctttaacaaaggttcc 375
Query: 246 tttagttacccacctgcaaatctgctccttaaagaaagtccttcttatcccatgattccc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tttagttacccacctgcaaatctgctccttaaagaaagtccttcttatcccatgattccc 315
Query: 306 cccacattcacttcactttcatcaaaacatttcactggcttatggatttctactttgcag 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cccacattcacttcactttcatcaaaacatttcactggcttatggatttctactttgcag 255
Query: 366 aaaataatcttaatgacatttacatttttattttttcttcttcattaaacagtacagggt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aaaataatcttaatgacatttacatttttattttttcttcttcattaaacagtacagggt 195
Query: 426 aatgccagggccaaaaagggggagtgggtgggtaggggag 465
||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aatgccagggccaaaaagggggagtgggtgggtaggggag 155
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_c21.g1 MSMg01no078_c21.g1 CHROMAT_FILE:
MSMg01no078_c21.g1 PHD_FILE: MSMg01no078_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:25 2005
(650 letters)
>mm_chr4_77600771_77601820
Length = 1050
Score = 1048 bits (542), Expect = 0.0
Identities = 616/650 (94%), Gaps = 16/650 (2%)
Strand = Plus / Plus
Query: 1 ctaactgacacagtatgtgctttagatggaatccaccaggagtgccatgatataaagaaa 60
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ctaactgacacagtatgtgctttagatggaatccaccaggagcgccatgatataaagaag 260
Query: 61 agatgccctgcctagacattttggataatcctacattacagacttgtaatcttgagtttg 120
||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 261 agacaccctgcctagacattttgaataatcctacattacagacttgtactcttgagtttg 320
Query: 121 attctaaatatgtaactaaaaaggaaataattaacagtcacactagagaacattgtatct 180
|||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 321 attctaaatatgcaactaaaaaggcaataattaacagtcaaactagagaacattgtatct 380
Query: 181 ggtagagggttatgtatccagaatatataagtaaaaaacagaatatcataaaacaattaa 240
| |||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 381 gatagagggttatgcatccagaatatataagtaa---------------aaaacaattaa 425
Query: 241 ataacccttctagagagggtagagaagaaaacagagatttctcaaaagatgtatctcaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ataacccttctagagagggtagagaagaaaacagagatttctcaaaagatgtatctcaaa 485
Query: 301 tggcagagcaaactttaaaaatgtccaacatatttagacatcaggaaaatgcaaattaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tggcagagcaaactttaaaaatgtccaacatatttagacatcaggaaaatgcaaattaaa 545
Query: 361 acaacttggaggtttcatcttactacagaaagaagggccaagattaacaatataaattat 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 546 acaacttggaggtttcatcttactacagaaagaaggg-caagattaacaatataaattat 604
Query: 421 gacagctattggtaaaaatgtgaaaaagtgaaacacgtactactcttggcagtagtgcaa 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 605 gacagctattggtaaaaatgtgaaaaagtgaaacacatactactcttggcagtagtgcaa 664
Query: 481 taaaggaaaatgactgttgaaatcagtgttaagatttttcaaaaagttgaggctcagtct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 taaaggaaaatgactgttgaaatcagtgttaagatttttcaaaaagttgaggctcagtct 724
Query: 541 accacaagatcaagttataccactcttggcatctactcaaaggtctttgcatcctgctac 600
|||||||||||||| |||| ||| | |||||||||| ||||| |||||||||||||||||
Sbjct: 725 accacaagatcaagctataacacacgtggcatctacccaaagctctttgcatcctgctac 784
Query: 601 aaagcaacttcttacactttcactgctgttctattcataataaccagaag 650
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 aaagcaacttcttacactttcactgctgttctattcataataaccagaag 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
