BAC Information

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BAC

Clone NameMSMg01-078D04
Chromosome4 (Build37)
Map Location 96,839,465 - 96,839,864
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia, LOC100039459, LOC669426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078D04.T7 (MSMg01no078_d04.b1)MSMg01-078D04.TJ (MSMg01no078_d04.g1)
ACCAG299590AG299591
length667676
length of high quality
(start - end)
400 (68 - 467)317 (76 - 392)
definitionCHROMAT_FILE: MSMg01no078_d04.b1 PHD_FILE: MSMg01no078_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:27 2005CHROMAT_FILE: MSMg01no078_d04.g1 PHD_FILE: MSMg01no078_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTGAATAACAACTATAGTTAATACCAATTTAGGTCGCAAACAT
CTGTATCATCCATTCTCTATCACTGCTATAGCAAGTAGCCACATACTTAG
TGGGGTGAAACAACACACATTTATTATCTTGTCCTTTACAAGGTCACACA
GAGGTCTTTGACTTTTTCTGGAATAAAGTAGTCCTTGTGAGAGACTATTT
TCTCCATCTTTATCAAGCTCTAACATTCACACGCATTCTTTGGTTCCTGT
GTCCTTTTATTCTCACCATTATAGGCATGCACTAATGTCTTTCTCCCAAC
ACATCACTGTGATTTCTTCCTTTATGACAACTTTCTTTGTGATATGTTCT
CTCCTATCACCCTCTGTAACTTAAAGAAATCGCCATGACATTAAACTTAC
TATAATAATCCAGGTTAAATCCTTTTGCTCTTCAATTCTTGAATTTAATC
CATATAGTCCACATCCGCCATAACCTGTCGAAAAAATTATATTCAGAGAT
GCTTGGTGATTACATCCTTGAATGTGTTTGAAGGTAGCCATCGTTCCTCG
CCTGCCCTGAAAATTACCCTTTTTTGGGGCTTTTAACAAATCCCTTTAAA
GAAGTTTCCCAAGGTAA
NACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCTTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGATTATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAGGAACCCAGATACCCCTCAACAGAGGAATGGATACCGAAAAT
GTGGAACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTATGCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTTCCAAAGGAATTTCCCCCACATGTACTCCCTGATAAT
TGTATTGCTAGCCCCTAACCTAGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_d04.b1 MSMg01no078_d04.b1 CHROMAT_FILE:
MSMg01no078_d04.b1 PHD_FILE: MSMg01no078_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:27 2005
         (400 letters)



>mm_chr4_96839153_96839952
          Length = 800

 Score =  758 bits (392), Expect = 0.0
 Identities = 398/400 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatagttaataccaatttaggtcgcaaacatctgtatcatccattctctatcactgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 actatagttaataccaatttaggtcgcaaacatctgtatcatccattctctatcactgct 653

                                                                       
Query: 61  atagcaagtagccacatacttagtggggtgaaacaacacacatttattatcttgtccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 atagcaagtagccacatacttagtggggtgaaacaacacacatttattatcttgtccttt 593

                                                                       
Query: 121 acaaggtcacacagaggtctttgactttttctggaataaagtagtccttgtgagagacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 acaaggtcacacagaggtctttgactttttctggaataaagtagtccttgtgagagacta 533

                                                                       
Query: 181 ttttctccatctttatcaagctctaacattcacacgcattctttggttcctgtgtccttt 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 532 ttttctccatctttatcaagctctaacattcacacacattctttggttcctgtgtccttt 473

                                                                       
Query: 241 tattctcaccattataggcatgcactaatgtctttctcccaacacatcactgtgatttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tattctcaccattataggcatgcactaatgtctttctcccaacacatcactgtgatttct 413

                                                                       
Query: 301 tcctttatgacaactttctttgtgatatgttctctcctatcaccctctgtaacttaaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tcctttatgacaactttctttgtgatatgttctctcctatcaccctctgtaacttaaaga 353

                                                   
Query: 361 aatcgccatgacattaaacttactataataatccaggtta 400
           |||| |||||||||||||||||||||||||||||||||||
Sbjct: 352 aatcaccatgacattaaacttactataataatccaggtta 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)